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A

addGrammarOption(Options) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

addHelpOption(Options) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

addLipidFileInputOption(Options) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

addLipidNameInputOption(Options) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

addOutputToFileOption(Options) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

addVersionOption(Options) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

C

CmdLineParser - Class in de.isas.lipidomics.palinom.cli

Create a new command line parser for parsing of lipid names.

CmdLineParser() - Constructor for class de.isas.lipidomics.palinom.cli.CmdLineParser

D

de.isas.lipidomics.palinom.cli - package de.isas.lipidomics.palinom.cli

This package contains the command line interface for jgoslin.

L

LIPIDMAPS_CLASS_REGEXP - Static variable in class de.isas.lipidomics.palinom.cli.CmdLineParser

M

main(String[]) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

Runs the command line parser for jgoslin, including validation.

P

parseName(String) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

parseNames(Stream<String>) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

parseNamesWith(Stream<String>, CmdLineParser.ValidationResult.Grammar) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

parseNameWith(String, CmdLineParser.ValidationResult.Grammar) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

T

toTable(List<Pair<String, List<CmdLineParser.ValidationResult>>>) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

W

writeToFile(File, List<Pair<String, List<CmdLineParser.ValidationResult>>>) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

writeToStdOut(List<Pair<String, List<CmdLineParser.ValidationResult>>>) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

writeToWriter(BufferedWriter, List<Pair<String, List<CmdLineParser.ValidationResult>>>) - Static method in class de.isas.lipidomics.palinom.cli.CmdLineParser

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