All Classes Interface Summary Class Summary Enum Summary Exception Summary
| Class |
Description |
| Adduct |
An adduct, generally, consists of a sum formula part, an adduct string, the
charge and the charge sign.
|
| CmdLineParser |
Create a new command line parser for parsing of lipid names.
|
| ConstraintViolationException |
This Exception is used for validation errors, where constraints have not been
met.
|
| Element |
Enumeration for typical chemical elements in lipids.
|
| ElementTable |
Accounting table for chemical element frequency.
|
| ExternalDatabaseReference |
An external database reference for a lipid encodes the link to identify the
referenced lipid, contains its native abbreviation and name, the database's
element id and the name as normalized by Goslin / PaLiNom.
|
| FattyAcid |
A fatty acid with a specific type.
|
| FattyAcidType |
The type of a fatty acid, reflecting the structural properties following the
Liebisch hierarchy.
|
| Fragment |
A generic lipid fragment.
|
| GoslinBaseVisitor<T> |
This class provides an empty implementation of GoslinVisitor,
which can be extended to create a visitor which only needs to handle a subset
of the available methods. |
| GoslinErrorHandler |
|
| GoslinFragmentsBaseVisitor<T> |
This class provides an empty implementation of GoslinFragmentsVisitor,
which can be extended to create a visitor which only needs to handle a subset
of the available methods. |
| GoslinFragmentsLexer |
|
| GoslinFragmentsParser |
|
| GoslinFragmentsParser.Adduct_infoContext |
|
| GoslinFragmentsParser.Adduct_separatorContext |
|
| GoslinFragmentsParser.Adduct2Context |
|
| GoslinFragmentsParser.Adduct4Context |
|
| GoslinFragmentsParser.AdductContext |
|
| GoslinFragmentsParser.Arbitrary_adductContext |
|
| GoslinFragmentsParser.Carbon_db_separatorContext |
|
| GoslinFragmentsParser.CarbonContext |
|
| GoslinFragmentsParser.CharacterContext |
|
| GoslinFragmentsParser.Charge_signContext |
|
| GoslinFragmentsParser.ChargeContext |
|
| GoslinFragmentsParser.CistransContext |
|
| GoslinFragmentsParser.Cl_subspeciesContext |
|
| GoslinFragmentsParser.ClContext |
|
| GoslinFragmentsParser.Db_countContext |
|
| GoslinFragmentsParser.Db_hydroxyl_separatorContext |
|
| GoslinFragmentsParser.Db_position_numberContext |
|
| GoslinFragmentsParser.Db_position_separatorContext |
|
| GoslinFragmentsParser.Db_positionContext |
|
| GoslinFragmentsParser.Db_positionsContext |
|
| GoslinFragmentsParser.Db_single_positionContext |
|
| GoslinFragmentsParser.DbContext |
|
| GoslinFragmentsParser.Dgl_subspeciesContext |
|
| GoslinFragmentsParser.DglContext |
|
| GoslinFragmentsParser.DigitContext |
|
| GoslinFragmentsParser.Dlcl_subspeciesContext |
|
| GoslinFragmentsParser.DlclContext |
|
| GoslinFragmentsParser.Dpl_oContext |
|
| GoslinFragmentsParser.DplContext |
|
| GoslinFragmentsParser.DslContext |
|
| GoslinFragmentsParser.ElementContext |
|
| GoslinFragmentsParser.EtherContext |
|
| GoslinFragmentsParser.Fa_pureContext |
|
| GoslinFragmentsParser.Fa2_sortedContext |
|
| GoslinFragmentsParser.Fa2_unsortedContext |
|
| GoslinFragmentsParser.Fa2Context |
|
| GoslinFragmentsParser.Fa3_sortedContext |
|
| GoslinFragmentsParser.Fa3_unsortedContext |
|
| GoslinFragmentsParser.Fa3Context |
|
| GoslinFragmentsParser.Fa4_sortedContext |
|
| GoslinFragmentsParser.Fa4_unsortedContext |
|
| GoslinFragmentsParser.Fa4Context |
|
| GoslinFragmentsParser.FaContext |
|
| GoslinFragmentsParser.Frag_charContext |
|
| GoslinFragmentsParser.Fragment_nameContext |
|
| GoslinFragmentsParser.Gl_speciesContext |
|
| GoslinFragmentsParser.GlContext |
|
| GoslinFragmentsParser.Headgroup_separatorContext |
|
| GoslinFragmentsParser.Heavy_faContext |
|
| GoslinFragmentsParser.Heavy_hgContext |
|
| GoslinFragmentsParser.Heavy_lcbContext |
|
| GoslinFragmentsParser.HeavyContext |
|
| GoslinFragmentsParser.Hg_clcContext |
|
| GoslinFragmentsParser.Hg_clContext |
|
| GoslinFragmentsParser.Hg_dgl_fullContext |
|
| GoslinFragmentsParser.Hg_dglContext |
|
| GoslinFragmentsParser.Hg_dlclcContext |
|
| GoslinFragmentsParser.Hg_dlclContext |
|
| GoslinFragmentsParser.Hg_dslcContext |
|
| GoslinFragmentsParser.Hg_dslContext |
|
| GoslinFragmentsParser.Hg_lpim_numberContext |
|
| GoslinFragmentsParser.Hg_lpimContext |
|
| GoslinFragmentsParser.Hg_lpl_ocContext |
|
| GoslinFragmentsParser.Hg_lpl_oContext |
|
| GoslinFragmentsParser.Hg_lplcContext |
|
| GoslinFragmentsParser.Hg_lplContext |
|
| GoslinFragmentsParser.Hg_lslcContext |
|
| GoslinFragmentsParser.Hg_lslContext |
|
| GoslinFragmentsParser.Hg_mgl_fullContext |
|
| GoslinFragmentsParser.Hg_mglContext |
|
| GoslinFragmentsParser.Hg_mlclcContext |
|
| GoslinFragmentsParser.Hg_mlclContext |
|
| GoslinFragmentsParser.Hg_pim_numberContext |
|
| GoslinFragmentsParser.Hg_pimContext |
|
| GoslinFragmentsParser.Hg_pip_dContext |
|
| GoslinFragmentsParser.Hg_pip_mContext |
|
| GoslinFragmentsParser.Hg_pip_pureContext |
|
| GoslinFragmentsParser.Hg_pip_tContext |
|
| GoslinFragmentsParser.Hg_pipContext |
|
| GoslinFragmentsParser.Hg_pl_ocContext |
|
| GoslinFragmentsParser.Hg_pl_oContext |
|
| GoslinFragmentsParser.Hg_plcContext |
|
| GoslinFragmentsParser.Hg_plContext |
|
| GoslinFragmentsParser.Hg_sac_di_cContext |
|
| GoslinFragmentsParser.Hg_sac_diContext |
|
| GoslinFragmentsParser.Hg_sac_f_cContext |
|
| GoslinFragmentsParser.Hg_sac_fContext |
|
| GoslinFragmentsParser.Hg_sgl_fullContext |
|
| GoslinFragmentsParser.Hg_sglContext |
|
| GoslinFragmentsParser.Hg_sqml_fullContext |
|
| GoslinFragmentsParser.Hg_sqmlContext |
|
| GoslinFragmentsParser.Hg_stcContext |
|
| GoslinFragmentsParser.Hg_stcsContext |
|
| GoslinFragmentsParser.Hg_steContext |
|
| GoslinFragmentsParser.Hg_stesContext |
|
| GoslinFragmentsParser.Hg_tgl_fullContext |
|
| GoslinFragmentsParser.Hg_tglContext |
|
| GoslinFragmentsParser.Hg_tplcContext |
|
| GoslinFragmentsParser.Hg_tplContext |
|
| GoslinFragmentsParser.HydroxylContext |
|
| GoslinFragmentsParser.Isotope_countContext |
|
| GoslinFragmentsParser.Isotope_elementContext |
|
| GoslinFragmentsParser.Isotope_numberContext |
|
| GoslinFragmentsParser.IsotopeContext |
|
| GoslinFragmentsParser.IsotopesContext |
|
| GoslinFragmentsParser.Just_lipidContext |
|
| GoslinFragmentsParser.Lcb_pureContext |
|
| GoslinFragmentsParser.LcbContext |
|
| GoslinFragmentsParser.Lipid_eofContext |
|
| GoslinFragmentsParser.Lipid_pureContext |
|
| GoslinFragmentsParser.LipidContext |
|
| GoslinFragmentsParser.Lpl_oContext |
|
| GoslinFragmentsParser.LplContext |
|
| GoslinFragmentsParser.LslContext |
|
| GoslinFragmentsParser.MediatorcContext |
|
| GoslinFragmentsParser.MediatorContext |
|
| GoslinFragmentsParser.MglContext |
|
| GoslinFragmentsParser.Mlcl_subspeciesContext |
|
| GoslinFragmentsParser.MlclContext |
|
| GoslinFragmentsParser.NumberContext |
|
| GoslinFragmentsParser.Old_hydroxylContext |
|
| GoslinFragmentsParser.Pl_oContext |
|
| GoslinFragmentsParser.Pl_speciesContext |
|
| GoslinFragmentsParser.Pl_subspeciesContext |
|
| GoslinFragmentsParser.Plasmalogen_separatorContext |
|
| GoslinFragmentsParser.PlContext |
|
| GoslinFragmentsParser.Round_close_bracketContext |
|
| GoslinFragmentsParser.Round_open_bracketContext |
|
| GoslinFragmentsParser.Sac_di_subspeciesContext |
|
| GoslinFragmentsParser.Sac_diContext |
|
| GoslinFragmentsParser.Sac_f_subspeciesContext |
|
| GoslinFragmentsParser.Sac_fContext |
|
| GoslinFragmentsParser.Sac_speciesContext |
|
| GoslinFragmentsParser.SaccharolipidContext |
|
| GoslinFragmentsParser.SglContext |
|
| GoslinFragmentsParser.SignContext |
|
| GoslinFragmentsParser.Sl_speciesContext |
|
| GoslinFragmentsParser.Sl_subspeciesContext |
|
| GoslinFragmentsParser.SlContext |
|
| GoslinFragmentsParser.Sorted_fa_separatorContext |
|
| GoslinFragmentsParser.SqmlContext |
|
| GoslinFragmentsParser.StcContext |
|
| GoslinFragmentsParser.StContext |
|
| GoslinFragmentsParser.SteContext |
|
| GoslinFragmentsParser.SterolContext |
|
| GoslinFragmentsParser.StesContext |
|
| GoslinFragmentsParser.Tgl_subspeciesContext |
|
| GoslinFragmentsParser.TglContext |
|
| GoslinFragmentsParser.Tpl_subspeciesContext |
|
| GoslinFragmentsParser.TplContext |
|
| GoslinFragmentsParser.Unsorted_fa_separatorContext |
|
| GoslinFragmentsVisitor<T> |
|
| GoslinFragmentsVisitorImpl |
Base visitor implementation for the GoslinFragments grammar.
|
| GoslinFragmentsVisitorParser |
Parser implementation for the GoslinFragments grammar.
|
| GoslinLexer |
|
| GoslinParser |
|
| GoslinParser.Adduct_infoContext |
|
| GoslinParser.Adduct_separatorContext |
|
| GoslinParser.Adduct2Context |
|
| GoslinParser.Adduct4Context |
|
| GoslinParser.AdductContext |
|
| GoslinParser.Arbitrary_adductContext |
|
| GoslinParser.Carbon_db_separatorContext |
|
| GoslinParser.CarbonContext |
|
| GoslinParser.CharacterContext |
|
| GoslinParser.Charge_signContext |
|
| GoslinParser.ChargeContext |
|
| GoslinParser.CistransContext |
|
| GoslinParser.Cl_subspeciesContext |
|
| GoslinParser.ClContext |
|
| GoslinParser.Db_countContext |
|
| GoslinParser.Db_hydroxyl_separatorContext |
|
| GoslinParser.Db_position_numberContext |
|
| GoslinParser.Db_position_separatorContext |
|
| GoslinParser.Db_positionContext |
|
| GoslinParser.Db_positionsContext |
|
| GoslinParser.Db_single_positionContext |
|
| GoslinParser.DbContext |
|
| GoslinParser.Dgl_subspeciesContext |
|
| GoslinParser.DglContext |
|
| GoslinParser.DigitContext |
|
| GoslinParser.Dlcl_subspeciesContext |
|
| GoslinParser.DlclContext |
|
| GoslinParser.Dpl_oContext |
|
| GoslinParser.DplContext |
|
| GoslinParser.DslContext |
|
| GoslinParser.ElementContext |
|
| GoslinParser.EtherContext |
|
| GoslinParser.Fa_pureContext |
|
| GoslinParser.Fa2_sortedContext |
|
| GoslinParser.Fa2_unsortedContext |
|
| GoslinParser.Fa2Context |
|
| GoslinParser.Fa3_sortedContext |
|
| GoslinParser.Fa3_unsortedContext |
|
| GoslinParser.Fa3Context |
|
| GoslinParser.Fa4_sortedContext |
|
| GoslinParser.Fa4_unsortedContext |
|
| GoslinParser.Fa4Context |
|
| GoslinParser.FaContext |
|
| GoslinParser.Gl_speciesContext |
|
| GoslinParser.GlContext |
|
| GoslinParser.Headgroup_separatorContext |
|
| GoslinParser.Heavy_faContext |
|
| GoslinParser.Heavy_hgContext |
|
| GoslinParser.Heavy_lcbContext |
|
| GoslinParser.HeavyContext |
|
| GoslinParser.Hg_clcContext |
|
| GoslinParser.Hg_clContext |
|
| GoslinParser.Hg_dgl_fullContext |
|
| GoslinParser.Hg_dglContext |
|
| GoslinParser.Hg_dlclcContext |
|
| GoslinParser.Hg_dlclContext |
|
| GoslinParser.Hg_dslcContext |
|
| GoslinParser.Hg_dslContext |
|
| GoslinParser.Hg_lpim_numberContext |
|
| GoslinParser.Hg_lpimContext |
|
| GoslinParser.Hg_lpl_ocContext |
|
| GoslinParser.Hg_lpl_oContext |
|
| GoslinParser.Hg_lplcContext |
|
| GoslinParser.Hg_lplContext |
|
| GoslinParser.Hg_lslcContext |
|
| GoslinParser.Hg_lslContext |
|
| GoslinParser.Hg_mgl_fullContext |
|
| GoslinParser.Hg_mglContext |
|
| GoslinParser.Hg_mlclcContext |
|
| GoslinParser.Hg_mlclContext |
|
| GoslinParser.Hg_pim_numberContext |
|
| GoslinParser.Hg_pimContext |
|
| GoslinParser.Hg_pip_dContext |
|
| GoslinParser.Hg_pip_mContext |
|
| GoslinParser.Hg_pip_pureContext |
|
| GoslinParser.Hg_pip_tContext |
|
| GoslinParser.Hg_pipContext |
|
| GoslinParser.Hg_pl_ocContext |
|
| GoslinParser.Hg_pl_oContext |
|
| GoslinParser.Hg_plcContext |
|
| GoslinParser.Hg_plContext |
|
| GoslinParser.Hg_sac_di_cContext |
|
| GoslinParser.Hg_sac_diContext |
|
| GoslinParser.Hg_sac_f_cContext |
|
| GoslinParser.Hg_sac_fContext |
|
| GoslinParser.Hg_sgl_fullContext |
|
| GoslinParser.Hg_sglContext |
|
| GoslinParser.Hg_sqml_fullContext |
|
| GoslinParser.Hg_sqmlContext |
|
| GoslinParser.Hg_stcContext |
|
| GoslinParser.Hg_stcsContext |
|
| GoslinParser.Hg_steContext |
|
| GoslinParser.Hg_stesContext |
|
| GoslinParser.Hg_tgl_fullContext |
|
| GoslinParser.Hg_tglContext |
|
| GoslinParser.Hg_tplcContext |
|
| GoslinParser.Hg_tplContext |
|
| GoslinParser.HydroxylContext |
|
| GoslinParser.Isotope_countContext |
|
| GoslinParser.Isotope_elementContext |
|
| GoslinParser.Isotope_numberContext |
|
| GoslinParser.IsotopeContext |
|
| GoslinParser.IsotopesContext |
|
| GoslinParser.Lcb_pureContext |
|
| GoslinParser.LcbContext |
|
| GoslinParser.Lipid_eofContext |
|
| GoslinParser.Lipid_pureContext |
|
| GoslinParser.LipidContext |
|
| GoslinParser.Lpl_oContext |
|
| GoslinParser.LplContext |
|
| GoslinParser.LslContext |
|
| GoslinParser.MediatorcContext |
|
| GoslinParser.MediatorContext |
|
| GoslinParser.MglContext |
|
| GoslinParser.Mlcl_subspeciesContext |
|
| GoslinParser.MlclContext |
|
| GoslinParser.NumberContext |
|
| GoslinParser.Old_hydroxylContext |
|
| GoslinParser.Pl_oContext |
|
| GoslinParser.Pl_speciesContext |
|
| GoslinParser.Pl_subspeciesContext |
|
| GoslinParser.Plasmalogen_separatorContext |
|
| GoslinParser.PlContext |
|
| GoslinParser.Round_close_bracketContext |
|
| GoslinParser.Round_open_bracketContext |
|
| GoslinParser.Sac_di_subspeciesContext |
|
| GoslinParser.Sac_diContext |
|
| GoslinParser.Sac_f_subspeciesContext |
|
| GoslinParser.Sac_fContext |
|
| GoslinParser.Sac_speciesContext |
|
| GoslinParser.SaccharolipidContext |
|
| GoslinParser.SglContext |
|
| GoslinParser.Sl_speciesContext |
|
| GoslinParser.Sl_subspeciesContext |
|
| GoslinParser.SlContext |
|
| GoslinParser.Sorted_fa_separatorContext |
|
| GoslinParser.SqmlContext |
|
| GoslinParser.StcContext |
|
| GoslinParser.StContext |
|
| GoslinParser.SteContext |
|
| GoslinParser.SterolContext |
|
| GoslinParser.StesContext |
|
| GoslinParser.Tgl_subspeciesContext |
|
| GoslinParser.TglContext |
|
| GoslinParser.Tpl_subspeciesContext |
|
| GoslinParser.TplContext |
|
| GoslinParser.Unsorted_fa_separatorContext |
|
| GoslinVisitor<T> |
This interface defines a complete generic visitor for a parse tree produced
by GoslinParser. |
| GoslinVisitorImpl |
Base visitor implementation for the Goslin grammar.
|
| GoslinVisitorParser |
Parser implementation for the Goslin grammar.
|
| HandlerUtils |
Common functions for ANTLRv4's RuleNode handling.
|
| HeadGroup |
This class represents functional head groups of lipids.
|
| HMDBBaseVisitor<T> |
This class provides an empty implementation of HMDBVisitor,
which can be extended to create a visitor which only needs to handle a subset
of the available methods. |
| HMDBLexer |
|
| HMDBParser |
|
| HMDBParser.Carbon_db_separatorContext |
|
| HMDBParser.CarbonContext |
|
| HMDBParser.CistransContext |
|
| HMDBParser.Db_countContext |
|
| HMDBParser.Db_position_numberContext |
|
| HMDBParser.Db_position_separatorContext |
|
| HMDBParser.Db_positionContext |
|
| HMDBParser.Db_positionsContext |
|
| HMDBParser.Db_single_positionContext |
|
| HMDBParser.Db_suffix_numberContext |
|
| HMDBParser.Db_suffixContext |
|
| HMDBParser.DbContext |
|
| HMDBParser.DigitContext |
|
| HMDBParser.Ether_link_posContext |
|
| HMDBParser.Ether_typeContext |
|
| HMDBParser.EtherContext |
|
| HMDBParser.Fa_coreContext |
|
| HMDBParser.Fa_faContext |
|
| HMDBParser.Fa_hgContext |
|
| HMDBParser.Fa_lcb_prefix_separatorContext |
|
| HMDBParser.Fa_lcb_prefix_typeContext |
|
| HMDBParser.Fa_lcb_prefixContext |
|
| HMDBParser.Fa_lcb_suffix_coreContext |
|
| HMDBParser.Fa_lcb_suffix_numberContext |
|
| HMDBParser.Fa_lcb_suffix_separatorContext |
|
| HMDBParser.Fa_lcb_suffix_typeContext |
|
| HMDBParser.Fa_lcb_suffixContext |
|
| HMDBParser.Fa_speciesContext |
|
| HMDBParser.Fa2_sortedContext |
|
| HMDBParser.Fa2_unsortedContext |
|
| HMDBParser.Fa2Context |
|
| HMDBParser.Fa3_sortedContext |
|
| HMDBParser.Fa3_unsortedContext |
|
| HMDBParser.Fa3Context |
|
| HMDBParser.Fa4_sortedContext |
|
| HMDBParser.Fa4_unsortedContext |
|
| HMDBParser.Fa4Context |
|
| HMDBParser.FaContext |
|
| HMDBParser.Fatty_acidContext |
|
| HMDBParser.Furan_fa_diContext |
|
| HMDBParser.Furan_fa_monoContext |
|
| HMDBParser.Furan_faContext |
|
| HMDBParser.Ganglioside_namesContext |
|
| HMDBParser.GangliosideContext |
|
| HMDBParser.Gl_faContext |
|
| HMDBParser.Gl_hgContext |
|
| HMDBParser.Gl_molecular_faContext |
|
| HMDBParser.Gl_molecular_hgContext |
|
| HMDBParser.Gl_molecularContext |
|
| HMDBParser.Gl_mono_faContext |
|
| HMDBParser.Gl_mono_hgContext |
|
| HMDBParser.Gl_monoContext |
|
| HMDBParser.Gl_regularContext |
|
| HMDBParser.GlContext |
|
| HMDBParser.Headgroup_separatorContext |
|
| HMDBParser.HydroxylContext |
|
| HMDBParser.Interlink_faContext |
|
| HMDBParser.Lcb_coreContext |
|
| HMDBParser.LcbContext |
|
| HMDBParser.Lipid_classContext |
|
| HMDBParser.Lipid_pureContext |
|
| HMDBParser.Lipid_suffixContext |
|
| HMDBParser.LipidContext |
|
| HMDBParser.Med_position_separatorContext |
|
| HMDBParser.Med_positionContext |
|
| HMDBParser.Med_positionsContext |
|
| HMDBParser.Med_suffixContext |
|
| HMDBParser.Mediator_singleContext |
|
| HMDBParser.MediatorContext |
|
| HMDBParser.NumberContext |
|
| HMDBParser.Pl_faContext |
|
| HMDBParser.Pl_four_faContext |
|
| HMDBParser.Pl_four_hgContext |
|
| HMDBParser.Pl_fourContext |
|
| HMDBParser.Pl_hgContext |
|
| HMDBParser.Pl_regularContext |
|
| HMDBParser.Pl_three_faContext |
|
| HMDBParser.Pl_three_hgContext |
|
| HMDBParser.Pl_threeContext |
|
| HMDBParser.PlContext |
|
| HMDBParser.Sl_hg_namesContext |
|
| HMDBParser.Sl_hg_prefixContext |
|
| HMDBParser.Sl_hg_suffixContext |
|
| HMDBParser.Sl_hgContext |
|
| HMDBParser.Sl_lcb_speciesContext |
|
| HMDBParser.Sl_lcb_subspeciesContext |
|
| HMDBParser.Sl_lcbContext |
|
| HMDBParser.SlContext |
|
| HMDBParser.Sorted_fa_separatorContext |
|
| HMDBParser.St_species_faContext |
|
| HMDBParser.St_species_hgContext |
|
| HMDBParser.St_speciesContext |
|
| HMDBParser.St_sub1_faContext |
|
| HMDBParser.St_sub1_hgContext |
|
| HMDBParser.St_sub1Context |
|
| HMDBParser.St_sub2_faContext |
|
| HMDBParser.St_sub2_hgContext |
|
| HMDBParser.St_sub2Context |
|
| HMDBParser.StContext |
|
| HMDBParser.Unsorted_fa_separatorContext |
|
| HMDBVisitor<T> |
This interface defines a complete generic visitor for a parse tree produced
by HMDBParser. |
| HmdbVisitorImpl |
Base visitor implementation for the GoslinFragments grammar.
|
| HmdbVisitorParser |
Parser implementation for the Hmdb grammar.
|
| LipidAdduct |
Base class for lipid names parsed using the different grammars.
|
| LipidCategory |
The lipid category nomenclature follows the shorthand notation of
|
| LipidClass |
This class was generated by the LipidClassGenerator.
|
| LipidClassGenerator |
|
| LipidClassGenerator.LipidClassEntry |
|
| LipidFaBondType |
The lipid fatty acyl bond types define how the FA is connected to the head
group or which variant of a particular bond type it is.
|
| LipidIsomericSubspecies |
An isomeric subspecies.
|
| LipidLevel |
Defines the taxonomy of lipid levels, including UNDEFINED for lipids where
the level can not be inferred or does not apply.
|
| LipidMapsBaseVisitor<T> |
This class provides an empty implementation of LipidMapsVisitor,
which can be extended to create a visitor which only needs to handle a subset
of the available methods. |
| LipidMapsLexer |
|
| LipidMapsParser |
|
| LipidMapsParser.Carbon_db_separatorContext |
|
| LipidMapsParser.CarbonContext |
|
| LipidMapsParser.ChcContext |
|
| LipidMapsParser.ChContext |
|
| LipidMapsParser.Che_faContext |
|
| LipidMapsParser.ChecContext |
|
| LipidMapsParser.CheContext |
|
| LipidMapsParser.CistransContext |
|
| LipidMapsParser.Cl_speciesContext |
|
| LipidMapsParser.Cl_subspeciesContext |
|
| LipidMapsParser.ClContext |
|
| LipidMapsParser.CtypeContext |
|
| LipidMapsParser.Db_countContext |
|
| LipidMapsParser.Db_hydroxyl_separatorContext |
|
| LipidMapsParser.Db_position_numberContext |
|
| LipidMapsParser.Db_position_separatorContext |
|
| LipidMapsParser.Db_positionContext |
|
| LipidMapsParser.Db_positionsContext |
|
| LipidMapsParser.Db_single_positionContext |
|
| LipidMapsParser.DbContext |
|
| LipidMapsParser.Dpl_speciesContext |
|
| LipidMapsParser.Dpl_subspeciesContext |
|
| LipidMapsParser.DplContext |
|
| LipidMapsParser.Dsl_speciesContext |
|
| LipidMapsParser.Dsl_subspeciesContext |
|
| LipidMapsParser.DslContext |
|
| LipidMapsParser.ElementContext |
|
| LipidMapsParser.EtherContext |
|
| LipidMapsParser.Fa_lplContext |
|
| LipidMapsParser.Fa_mod_separatorContext |
|
| LipidMapsParser.Fa_modContext |
|
| LipidMapsParser.Fa_no_hgContext |
|
| LipidMapsParser.Fa_pureContext |
|
| LipidMapsParser.Fa_separatorContext |
|
| LipidMapsParser.Fa_unmodContext |
|
| LipidMapsParser.Fa2_sortedContext |
|
| LipidMapsParser.Fa2_unsortedContext |
|
| LipidMapsParser.Fa2Context |
|
| LipidMapsParser.Fa3_sortedContext |
|
| LipidMapsParser.Fa3_unsortedContext |
|
| LipidMapsParser.Fa3Context |
|
| LipidMapsParser.Fa4_sortedContext |
|
| LipidMapsParser.Fa4_unsortedContext |
|
| LipidMapsParser.Fa4Context |
|
| LipidMapsParser.FaContext |
|
| LipidMapsParser.FourplContext |
|
| LipidMapsParser.GlContext |
|
| LipidMapsParser.Headgroup_separatorContext |
|
| LipidMapsParser.Hg_cheContext |
|
| LipidMapsParser.Hg_clcContext |
|
| LipidMapsParser.Hg_clContext |
|
| LipidMapsParser.Hg_ddplContext |
|
| LipidMapsParser.Hg_dplcContext |
|
| LipidMapsParser.Hg_dplContext |
|
| LipidMapsParser.Hg_dslcContext |
|
| LipidMapsParser.Hg_dslContext |
|
| LipidMapsParser.Hg_faContext |
|
| LipidMapsParser.Hg_fourplcContext |
|
| LipidMapsParser.Hg_fourplContext |
|
| LipidMapsParser.Hg_glcContext |
|
| LipidMapsParser.Hg_glContext |
|
| LipidMapsParser.Hg_lplcContext |
|
| LipidMapsParser.Hg_lplContext |
|
| LipidMapsParser.Hg_lslcContext |
|
| LipidMapsParser.Hg_lslContext |
|
| LipidMapsParser.Hg_sglcContext |
|
| LipidMapsParser.Hg_sglContext |
|
| LipidMapsParser.Hg_threeplcContext |
|
| LipidMapsParser.Hg_threeplContext |
|
| LipidMapsParser.Hydroxyl_lcbContext |
|
| LipidMapsParser.HydroxylContext |
|
| LipidMapsParser.Isoform_innerContext |
|
| LipidMapsParser.IsoformContext |
|
| LipidMapsParser.IsotopeContext |
|
| LipidMapsParser.Lcb_fa_modContext |
|
| LipidMapsParser.Lcb_fa_sortedContext |
|
| LipidMapsParser.Lcb_fa_unmodContext |
|
| LipidMapsParser.Lcb_faContext |
|
| LipidMapsParser.LcbContext |
|
| LipidMapsParser.Lipid_monoContext |
|
| LipidMapsParser.Lipid_pureContext |
|
| LipidMapsParser.Lipid_ruleContext |
|
| LipidMapsParser.LipidContext |
|
| LipidMapsParser.LplContext |
|
| LipidMapsParser.LslContext |
|
| LipidMapsParser.Mediator_constContext |
|
| LipidMapsParser.Mediator_name_separatorContext |
|
| LipidMapsParser.Mediator_number_pureContext |
|
| LipidMapsParser.Mediator_numbersContext |
|
| LipidMapsParser.Mediator_oxoContext |
|
| LipidMapsParser.Mediator_posContext |
|
| LipidMapsParser.Mediator_prefixContext |
|
| LipidMapsParser.Mediator_separatorContext |
|
| LipidMapsParser.Mediator_var_nameContext |
|
| LipidMapsParser.Mediator_var_namesContext |
|
| LipidMapsParser.Mediator_varContext |
|
| LipidMapsParser.MediatorContext |
|
| LipidMapsParser.Mod_textContext |
|
| LipidMapsParser.ModificationContext |
|
| LipidMapsParser.NumberContext |
|
| LipidMapsParser.Pip_posContext |
|
| LipidMapsParser.Pip_positionContext |
|
| LipidMapsParser.Pk_faContext |
|
| LipidMapsParser.Pk_hgContext |
|
| LipidMapsParser.PkContext |
|
| LipidMapsParser.PlContext |
|
| LipidMapsParser.Pure_fa_speciesContext |
|
| LipidMapsParser.Pure_faContext |
|
| LipidMapsParser.Round_close_bracketContext |
|
| LipidMapsParser.Round_open_bracketContext |
|
| LipidMapsParser.Sgl_speciesContext |
|
| LipidMapsParser.Sgl_subspeciesContext |
|
| LipidMapsParser.SglContext |
|
| LipidMapsParser.SlContext |
|
| LipidMapsParser.Special_cer_prefix_1_OContext |
|
| LipidMapsParser.Special_cer_prefixContext |
|
| LipidMapsParser.Special_cerContext |
|
| LipidMapsParser.Species_faContext |
|
| LipidMapsParser.Sphinganine_nameContext |
|
| LipidMapsParser.Sphingosine_nameContext |
|
| LipidMapsParser.Sphingoxine_pureContext |
|
| LipidMapsParser.Sphingoxine_varContext |
|
| LipidMapsParser.SphingoxineContext |
|
| LipidMapsParser.Square_close_bracketContext |
|
| LipidMapsParser.Square_open_bracketContext |
|
| LipidMapsParser.SterolContext |
|
| LipidMapsParser.Tgl_speciesContext |
|
| LipidMapsParser.Tgl_subspeciesContext |
|
| LipidMapsParser.TglContext |
|
| LipidMapsParser.ThreeplContext |
|
| LipidMapsVisitor<T> |
This interface defines a complete generic visitor for a parse tree produced
by LipidMapsParser. |
| LipidMapsVisitorParser |
Parser implementation for the LipidMaps grammar.
|
| LipidMolecularSubspecies |
A molecular subspecies.
|
| LipidSpecies |
A lipid species is the factual root of the object hierarchy.
|
| LipidSpeciesInfo |
This class summarizes the FA parts of a lipid, independent of its head group.
|
| LipidStructuralSubspecies |
A structural subspecies.
|
| ModificationsList |
|
| ParserRuleContextHandler<T extends org.antlr.v4.runtime.ParserRuleContext,U> |
Generic base class for context handler implementations for the different
grammar parsers.
|
| ParseTreeVisitorException |
Exception for illegal or unhandled cases within the parse tree visitor
handlers.
|
| ParsingException |
Exception which is thrown when syntactic errors are encountered.
|
| SumFormulaBaseVisitor<T> |
This class provides an empty implementation of SumFormulaVisitor,
which can be extended to create a visitor which only needs to handle a subset
of the available methods. |
| SumFormulaLexer |
|
| SumFormulaParser |
|
| SumFormulaParser.CountContext |
|
| SumFormulaParser.DigitContext |
|
| SumFormulaParser.Element_groupContext |
|
| SumFormulaParser.ElementContext |
|
| SumFormulaParser.Molecule_groupContext |
|
| SumFormulaParser.Molecule_ruleContext |
|
| SumFormulaParser.MoleculeContext |
|
| SumFormulaParser.Single_elementContext |
|
| SumFormulaVisitor<T> |
This interface defines a complete generic visitor for a parse tree produced
by SumFormulaParser. |
| SumFormulaVisitorImpl |
Base visitor implementation for the SumFormula grammar.
|
| SumFormulaVisitorParser |
Parser implementation for the SumFormula grammar.
|
| SwissLipidsBaseVisitor<T> |
This class provides an empty implementation of SwissLipidsVisitor,
which can be extended to create a visitor which only needs to handle a subset
of the available methods. |
| SwissLipidsLexer |
|
| SwissLipidsParser |
|
| SwissLipidsParser.Carbon_db_separatorContext |
|
| SwissLipidsParser.CarbonContext |
|
| SwissLipidsParser.CistransContext |
|
| SwissLipidsParser.Db_countContext |
|
| SwissLipidsParser.Db_position_numberContext |
|
| SwissLipidsParser.Db_position_separatorContext |
|
| SwissLipidsParser.Db_positionContext |
|
| SwissLipidsParser.Db_positionsContext |
|
| SwissLipidsParser.Db_single_positionContext |
|
| SwissLipidsParser.DbContext |
|
| SwissLipidsParser.DigitContext |
|
| SwissLipidsParser.EtherContext |
|
| SwissLipidsParser.Fa_coreContext |
|
| SwissLipidsParser.Fa_faContext |
|
| SwissLipidsParser.Fa_hgContext |
|
| SwissLipidsParser.Fa_lcb_prefix_separatorContext |
|
| SwissLipidsParser.Fa_lcb_prefix_typeContext |
|
| SwissLipidsParser.Fa_lcb_prefixContext |
|
| SwissLipidsParser.Fa_lcb_suffix_coreContext |
|
| SwissLipidsParser.Fa_lcb_suffix_numberContext |
|
| SwissLipidsParser.Fa_lcb_suffix_separatorContext |
|
| SwissLipidsParser.Fa_lcb_suffix_typeContext |
|
| SwissLipidsParser.Fa_lcb_suffixContext |
|
| SwissLipidsParser.Fa_speciesContext |
|
| SwissLipidsParser.Fa2_sortedContext |
|
| SwissLipidsParser.Fa2_unsortedContext |
|
| SwissLipidsParser.Fa2Context |
|
| SwissLipidsParser.Fa3_sortedContext |
|
| SwissLipidsParser.Fa3_unsortedContext |
|
| SwissLipidsParser.Fa3Context |
|
| SwissLipidsParser.Fa4_sortedContext |
|
| SwissLipidsParser.Fa4_unsortedContext |
|
| SwissLipidsParser.Fa4Context |
|
| SwissLipidsParser.FaContext |
|
| SwissLipidsParser.Fatty_acidContext |
|
| SwissLipidsParser.Gl_faContext |
|
| SwissLipidsParser.Gl_hgContext |
|
| SwissLipidsParser.Gl_molecular_faContext |
|
| SwissLipidsParser.Gl_molecular_hgContext |
|
| SwissLipidsParser.Gl_molecularContext |
|
| SwissLipidsParser.Gl_mono_faContext |
|
| SwissLipidsParser.Gl_mono_hgContext |
|
| SwissLipidsParser.Gl_monoContext |
|
| SwissLipidsParser.Gl_regularContext |
|
| SwissLipidsParser.GlContext |
|
| SwissLipidsParser.Headgroup_separatorContext |
|
| SwissLipidsParser.HydroxylContext |
|
| SwissLipidsParser.Lcb_coreContext |
|
| SwissLipidsParser.LcbContext |
|
| SwissLipidsParser.Lipid_pureContext |
|
| SwissLipidsParser.LipidContext |
|
| SwissLipidsParser.Med_position_separatorContext |
|
| SwissLipidsParser.Med_positionContext |
|
| SwissLipidsParser.Med_positionsContext |
|
| SwissLipidsParser.Med_suffixContext |
|
| SwissLipidsParser.Mediator_singleContext |
|
| SwissLipidsParser.MediatorContext |
|
| SwissLipidsParser.NumberContext |
|
| SwissLipidsParser.Pl_faContext |
|
| SwissLipidsParser.Pl_four_faContext |
|
| SwissLipidsParser.Pl_four_hgContext |
|
| SwissLipidsParser.Pl_fourContext |
|
| SwissLipidsParser.Pl_hgContext |
|
| SwissLipidsParser.Pl_regularContext |
|
| SwissLipidsParser.Pl_three_faContext |
|
| SwissLipidsParser.Pl_three_hgContext |
|
| SwissLipidsParser.Pl_threeContext |
|
| SwissLipidsParser.PlContext |
|
| SwissLipidsParser.Sl_hg_namesContext |
|
| SwissLipidsParser.Sl_hg_prefixContext |
|
| SwissLipidsParser.Sl_hg_suffixContext |
|
| SwissLipidsParser.Sl_hgContext |
|
| SwissLipidsParser.Sl_lcb_speciesContext |
|
| SwissLipidsParser.Sl_lcb_subspeciesContext |
|
| SwissLipidsParser.Sl_lcbContext |
|
| SwissLipidsParser.SlContext |
|
| SwissLipidsParser.Sorted_fa_separatorContext |
|
| SwissLipidsParser.St_species_faContext |
|
| SwissLipidsParser.St_species_hgContext |
|
| SwissLipidsParser.St_speciesContext |
|
| SwissLipidsParser.St_sub1_faContext |
|
| SwissLipidsParser.St_sub1_hgContext |
|
| SwissLipidsParser.St_sub1Context |
|
| SwissLipidsParser.St_sub2_hgContext |
|
| SwissLipidsParser.St_sub2Context |
|
| SwissLipidsParser.StContext |
|
| SwissLipidsParser.Unsorted_fa_separatorContext |
|
| SwissLipidsVisitor<T> |
This interface defines a complete generic visitor for a parse tree produced
by SwissLipidsParser. |
| SwissLipidsVisitorImpl |
Base visitor implementation for the SwissLipids grammar.
|
| SwissLipidsVisitorParser |
Parser implementation for the SwissLipids grammar.
|
| SyntaxError |
|
| SyntaxErrorListener |
|
| VisitorParser<T> |
Base interface for grammar-specific parser implementations based on the
ANTLRv4 generated parsers.
|