Package de.isas.lipidomics.domain
This package contains the main common domain models for lipids.
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Class Summary Class Description Adduct An adduct, generally, consists of a sum formula part, an adduct string, the charge and the charge sign.ElementTable Accounting table for chemical element frequency.ExternalDatabaseReference An external database reference for a lipid encodes the link to identify the referenced lipid, contains its native abbreviation and name, the database's element id and the name as normalized by Goslin / PaLiNom.FattyAcid A fatty acid with a specific type.Fragment A generic lipid fragment.HeadGroup This class represents functional head groups of lipids.LipidAdduct Base class for lipid names parsed using the different grammars.LipidIsomericSubspecies An isomeric subspecies.LipidMolecularSubspecies A molecular subspecies.LipidSpecies A lipid species is the factual root of the object hierarchy.LipidSpeciesInfo This class summarizes the FA parts of a lipid, independent of its head group.LipidStructuralSubspecies A structural subspecies.ModificationsList -
Enum Summary Enum Description Element Enumeration for typical chemical elements in lipids.FattyAcidType The type of a fatty acid, reflecting the structural properties following the Liebisch hierarchy.LipidCategory The lipid category nomenclature follows the shorthand notation ofLipidClass This class was generated by the LipidClassGenerator.LipidFaBondType The lipid fatty acyl bond types define how the FA is connected to the head group or which variant of a particular bond type it is.LipidLevel Defines the taxonomy of lipid levels, including UNDEFINED for lipids where the level can not be inferred or does not apply.