Package org.lifstools.jgoslin.domain

Class HeadgroupDecorator

java.lang.Object

org.lifstools.jgoslin.domain.FunctionalGroup

org.lifstools.jgoslin.domain.HeadgroupDecorator

public final class HeadgroupDecorator
extends FunctionalGroup

Author:

Dominik Kopczynski, Nils Hoffmann

Field Summary

Fields inherited from class org.lifstools.jgoslin.domain.FunctionalGroup

atomic, count, doubleBonds, elements, functionalGroups, knownFunctionalGroups, name, position, ringStereo, stereochemistry

Constructor Summary

Constructors

Constructor	Description
HeadgroupDecorator(String _name, int _position, int _count, ElementTable _elements, boolean _suffix, KnownFunctionalGroups knownFunctionalGroups)
HeadgroupDecorator(String _name, int _position, int _count, ElementTable _elements, boolean _suffix, LipidLevel _level, KnownFunctionalGroups knownFunctionalGroups)
HeadgroupDecorator(String _name, int _position, int _count, ElementTable _elements, KnownFunctionalGroups knownFunctionalGroups)
HeadgroupDecorator(String _name, KnownFunctionalGroups knownFunctionalGroups)

Method Summary

Modifier and Type	Method	Description
FunctionalGroup	copy()
LipidLevel	getLowestVisibleLevel()
boolean	isSuffix()
String	toString(LipidLevel level)

Methods inherited from class org.lifstools.jgoslin.domain.FunctionalGroup

addPosition, computeAndCopyElements, computeElements, getCount, getDoubleBonds, getElements, getFunctionalGroupElements, getFunctionalGroups, getFunctionalGroupsInternal, getName, getNDoubleBonds, getPosition, getRingStereo, getStereochemistry, getTotalFunctionalGroupCount, isAtomic, setAtomic, setCount, setDoubleBonds, setElements, setFunctionalGroups, setName, setPosition, setRingStereo, setStereochemistry, shiftPositions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

HeadgroupDecorator

public HeadgroupDecorator(String _name,
 KnownFunctionalGroups knownFunctionalGroups)

HeadgroupDecorator

public HeadgroupDecorator(String _name,
 int _position,
 int _count,
 ElementTable _elements,
 KnownFunctionalGroups knownFunctionalGroups)

HeadgroupDecorator

public HeadgroupDecorator(String _name,
 int _position,
 int _count,
 ElementTable _elements,
 boolean _suffix,
 KnownFunctionalGroups knownFunctionalGroups)

HeadgroupDecorator

public HeadgroupDecorator(String _name,
 int _position,
 int _count,
 ElementTable _elements,
 boolean _suffix,
 LipidLevel _level,
 KnownFunctionalGroups knownFunctionalGroups)

Method Details

copy

public FunctionalGroup copy()

Overrides:

copy in class FunctionalGroup

toString

public String toString(LipidLevel level)

Overrides:

toString in class FunctionalGroup

isSuffix

public boolean isSuffix()

getLowestVisibleLevel

public LipidLevel getLowestVisibleLevel()