Package org.lifstools.jgoslin.domain

Class LipidMolecularSpecies

java.lang.Object

org.lifstools.jgoslin.domain.LipidSpecies

org.lifstools.jgoslin.domain.LipidMolecularSpecies

Direct Known Subclasses:

LipidSnPosition

public class LipidMolecularSpecies
extends LipidSpecies

Molecular species level according to the 2020 update of the Liebisch shorthand nomenclature.

Author:

Dominik Kopczynski, Nils Hoffmann

See Also:

• LipidLevel

Field Summary

Fields inherited from class org.lifstools.jgoslin.domain.LipidSpecies

fa, faList, headGroup, info

Constructor Summary

Constructors

Constructor	Description
LipidMolecularSpecies(Headgroup _headgroup, Collection<FattyAcid> _fa, KnownFunctionalGroups knownFunctionalGroups)
LipidMolecularSpecies(Headgroup _headgroup, KnownFunctionalGroups knownFunctionalGroups)

Method Summary

Modifier and Type	Method	Description
String	buildLipidSubspeciesName()
String	buildLipidSubspeciesName(LipidLevel level)
ElementTable	getElements()
LipidLevel	getLipidLevel()
String	getLipidString()	Returns the normalized lipid string on the native level.
String	getLipidString(LipidLevel level)	Returns the normalized lipid string on the provided level.

Methods inherited from class org.lifstools.jgoslin.domain.LipidSpecies

getExtendedClass, getFaList, getHeadGroup, getInfo

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LipidMolecularSpecies

public LipidMolecularSpecies(Headgroup _headgroup,
 KnownFunctionalGroups knownFunctionalGroups)

LipidMolecularSpecies

public LipidMolecularSpecies(Headgroup _headgroup,
 Collection<FattyAcid> _fa,
 KnownFunctionalGroups knownFunctionalGroups)

Method Details

buildLipidSubspeciesName

public String buildLipidSubspeciesName()

buildLipidSubspeciesName

public String buildLipidSubspeciesName(LipidLevel level)

getLipidLevel

public LipidLevel getLipidLevel()

Overrides:

getLipidLevel in class LipidSpecies

getElements

public ElementTable getElements()

Overrides:

getElements in class LipidSpecies

getLipidString

public String getLipidString()

Description copied from class: LipidSpecies

Returns the normalized lipid string on the native level.

Overrides:

getLipidString in class LipidSpecies

Returns:

the normalized lipid string.

getLipidString

public String getLipidString(LipidLevel level)

Description copied from class: LipidSpecies

Returns the normalized lipid string on the provided level.

Overrides:

getLipidString in class LipidSpecies

Parameters:

level - the lipid level at which the lipid string should be generated.

Returns:

the normalized lipid string.