Uses of Class
de.isas.mztab2.model.SmallMoleculeFeature

Packages that use SmallMoleculeFeature

Package	Description
de.isas.mztab2.io.serialization	This package contains classes that implement custom Jackson serializers for the mzTab-M model objects.
de.isas.mztab2.model	Base package for the jmztab-m data model, generated from the mzTab_m_swagger.yml specification.
uk.ac.ebi.pride.jmztab2.utils.parser	This package contains text file line parser implementations for the mzTab-M document sections.

Uses of SmallMoleculeFeature in de.isas.mztab2.io.serialization

Methods in de.isas.mztab2.io.serialization with parameters of type SmallMoleculeFeature

Modifier and Type	Method	Description
void	SmallMoleculeFeatureSerializer.serialize(SmallMoleculeFeature smallMoleculeFeature, com.fasterxml.jackson.core.JsonGenerator jg, com.fasterxml.jackson.databind.SerializerProvider sp)
void	SmallMoleculeFeatureSerializer.serializeWithType(SmallMoleculeFeature value, com.fasterxml.jackson.core.JsonGenerator gen, com.fasterxml.jackson.databind.SerializerProvider serializers, com.fasterxml.jackson.databind.jsontype.TypeSerializer typeSer)

Constructor parameters in de.isas.mztab2.io.serialization with type arguments of type SmallMoleculeFeature

Constructor	Description
SmallMoleculeFeatureSerializer(Class<SmallMoleculeFeature> t)	Constructor for SmallMoleculeFeatureSerializer.

Uses of SmallMoleculeFeature in de.isas.mztab2.model

Methods in de.isas.mztab2.model that return SmallMoleculeFeature

Modifier and Type	Method	Description
SmallMoleculeFeature	SmallMoleculeFeature.abundanceAssay(List<Double> abundanceAssay)	Builder method for abundanceAssay.
SmallMoleculeFeature	SmallMoleculeFeature.addAbundanceAssayItem(Double abundanceAssayItem)	Add a single abundanceAssayItem to the abundanceAssay collection.
SmallMoleculeFeature	SmallMoleculeFeature.addCommentItem(Comment commentItem)	Add a single commentItem to the comment collection.
SmallMoleculeFeature	SmallMoleculeFeature.addOptItem(OptColumnMapping optItem)	Add a single optItem to the opt collection.
SmallMoleculeFeature	SmallMoleculeFeature.addSmeIdRefsItem(Integer smeIdRefsItem)	Add a single smeIdRefsItem to the smeIdRefs collection.
SmallMoleculeFeature	SmallMoleculeFeature.adductIon(String adductIon)	Builder method for adductIon.
SmallMoleculeFeature	SmallMoleculeFeature.charge(Integer charge)	Builder method for charge.
SmallMoleculeFeature	SmallMoleculeFeature.comment(List<Comment> comment)	Builder method for comment.
SmallMoleculeFeature	SmallMoleculeFeature.expMassToCharge(Double expMassToCharge)	Builder method for expMassToCharge.
SmallMoleculeFeature	SmallMoleculeFeature.isotopomer(Parameter isotopomer)	Builder method for isotopomer.
SmallMoleculeFeature	SmallMoleculeFeature.opt(List<OptColumnMapping> opt)	Builder method for opt.
SmallMoleculeFeature	SmallMoleculeFeature.retentionTimeInSeconds(Double retentionTimeInSeconds)	Builder method for retentionTimeInSeconds.
SmallMoleculeFeature	SmallMoleculeFeature.retentionTimeInSecondsEnd(Double retentionTimeInSecondsEnd)	Builder method for retentionTimeInSecondsEnd.
SmallMoleculeFeature	SmallMoleculeFeature.retentionTimeInSecondsStart(Double retentionTimeInSecondsStart)	Builder method for retentionTimeInSecondsStart.
SmallMoleculeFeature	SmallMoleculeFeature.smeIdRefAmbiguityCode(Integer smeIdRefAmbiguityCode)	Builder method for smeIdRefAmbiguityCode.
SmallMoleculeFeature	SmallMoleculeFeature.smeIdRefs(List<Integer> smeIdRefs)	Builder method for smeIdRefs.
SmallMoleculeFeature	SmallMoleculeFeature.smfId(Integer smfId)	Builder method for smfId.

Methods in de.isas.mztab2.model that return types with arguments of type SmallMoleculeFeature

Modifier and Type	Method	Description
@NotNull @Valid List<SmallMoleculeFeature>	MzTab.getSmallMoleculeFeature()	The small molecule feature section is table-based, representing individual MS regions (generally considered to be the elution profile for all isotopomers formed from a single charge state of a molecule), that have been measured/quantified.

Methods in de.isas.mztab2.model with parameters of type SmallMoleculeFeature

Modifier and Type	Method	Description
MzTab	MzTab.addSmallMoleculeFeatureItem(SmallMoleculeFeature smallMoleculeFeatureItem)	Add a single smallMoleculeFeatureItem to the smallMoleculeFeature collection.

Method parameters in de.isas.mztab2.model with type arguments of type SmallMoleculeFeature

Modifier and Type	Method	Description
void	MzTab.setSmallMoleculeFeature(List<SmallMoleculeFeature> smallMoleculeFeature)	Set smallMoleculeFeature.
MzTab	MzTab.smallMoleculeFeature(List<SmallMoleculeFeature> smallMoleculeFeature)	Builder method for smallMoleculeFeature.

Uses of SmallMoleculeFeature in uk.ac.ebi.pride.jmztab2.utils.parser

Methods in uk.ac.ebi.pride.jmztab2.utils.parser that return SmallMoleculeFeature

Modifier and Type	Method	Description
SmallMoleculeFeature	SMFLineParser.getRecord()	Retrieve the data line to a type mzTab domain object.