Package uk.ac.ebi.pride.jmztab2.utils.errors

Class MZTabException

java.lang.Object

java.lang.Throwable

java.lang.Exception

uk.ac.ebi.pride.jmztab2.utils.errors.MZTabException

All Implemented Interfaces:

Serializable

public class MZTabException
extends Exception

Wrap a MZTabError. This exception mainly used in parse the metadata section of mzTab file. Once raise exception, system will stop validate and output the error messages. NOTICE: In some special situation, the consistency constraints SHOULD be maintain in metadata section, for example: the assay[n]-sample_ref, study_variable[1-n]-assay_refs and so on. We suggest user raise this exception very carefully, because of this break the continuous validate principle. During process the value format, system will add the MZTabError into MZTabErrorList, instead of raise the exception directly. And all errors will output after validate the whole mzTab file.

Since:

29/01/13

Author:

qingwei

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
MZTabException(String message)	Constructor for MZTabException.
MZTabException(MZTabError error)	Constructor for MZTabException.
MZTabException(MZTabError error, Throwable cause)	Constructor for MZTabException.

Method Summary

Modifier and Type	Method	Description
MZTabError	getError()	Getter for the field error.

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MZTabException

public MZTabException(String message)

Constructor for MZTabException.

Parameters:

message - a String object.

MZTabException

public MZTabException(MZTabError error)

Constructor for MZTabException.

Parameters:

error - a MZTabError object.

MZTabException

public MZTabException(MZTabError error,
                      Throwable cause)

Constructor for MZTabException.

Parameters:

error - a MZTabError object.

cause - a Throwable object.

Method Detail

getError

public MZTabError getError()

Getter for the field error.

Returns:

a MZTabError object.