MZTabException.java
- package uk.ac.ebi.pride.jmztab2.utils.errors;
- /**
- * Wrap a {@link uk.ac.ebi.pride.jmztab2.utils.errors.MZTabError}. This exception mainly used in parse the metadata section of mzTab file.
- * Once raise exception, system will stop validate and output the error messages.
- *
- * NOTICE: In some special situation, the consistency constraints SHOULD be maintain in metadata section,
- * for example: the assay[n]-sample_ref, study_variable[1-n]-assay_refs and so on. We suggest user raise
- * this exception very carefully, because of this break the continuous validate principle. During process
- * the value format, system will add the {@link uk.ac.ebi.pride.jmztab2.utils.errors.MZTabError} into {@link uk.ac.ebi.pride.jmztab2.utils.errors.MZTabErrorList}, instead of raise
- * the exception directly. And all errors will output after validate the whole mzTab file.
- *
- * @author qingwei
- * @since 29/01/13
- *
- */
- public class MZTabException extends Exception {
- private MZTabError error;
- /**
- * <p>Constructor for MZTabException.</p>
- *
- * @param message a {@link java.lang.String} object.
- */
- public MZTabException(String message) {
- super(message);
- }
- /**
- * <p>Constructor for MZTabException.</p>
- *
- * @param error a {@link uk.ac.ebi.pride.jmztab2.utils.errors.MZTabError} object.
- */
- public MZTabException(MZTabError error) {
- super(error.toString());
- this.error = error;
- }
- /**
- * <p>Constructor for MZTabException.</p>
- *
- * @param error a {@link uk.ac.ebi.pride.jmztab2.utils.errors.MZTabError} object.
- * @param cause a {@link java.lang.Throwable} object.
- */
- public MZTabException(MZTabError error, Throwable cause) {
- super(error.toString(), cause);
- this.error = error;
- }
- /**
- * <p>Getter for the field <code>error</code>.</p>
- *
- * @return a {@link uk.ac.ebi.pride.jmztab2.utils.errors.MZTabError} object.
- */
- public MZTabError getError() {
- return error;
- }
- }