Package de.isas.mztab2.cvmapping

Class CvMappingUtils

java.lang.Object

de.isas.mztab2.cvmapping.CvMappingUtils

public class CvMappingUtils
extends Object

Utility methods for conversion between the mapping file domain and the mzTab domain.

Author:

nilshoffmann

Constructor Summary

Constructors

Constructor	Description
CvMappingUtils()

Method Summary

Modifier and Type	Method	Description
static Parameter	asParameter(CvTerm term)
static Parameter	asParameter(uk.ac.ebi.pride.utilities.ols.web.service.model.Term term)
static boolean	isEqualTo(Parameter one, Parameter two)
static boolean	isEqualTo(uk.ac.ebi.pride.utilities.ols.web.service.model.Term term, Parameter param)
static String	niceToString(CvMappingRule rule)	Creates a user-friendly string of a mapping rule.
static MZTabErrorType.Level	toErrorLevel(CvMappingRule.RequirementLevel requirementLevel)	Maps the provided requirement level to the corresponding MZTabErrorType.Level.
static String	toString(CvMappingRule rule)	Creates a string representation of a mapping rule.
static String	toString(List<CvTerm> terms)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CvMappingUtils

public CvMappingUtils()

Method Detail

toErrorLevel

public static MZTabErrorType.Level toErrorLevel(CvMappingRule.RequirementLevel requirementLevel)

Maps the provided requirement level to the corresponding MZTabErrorType.Level.

Parameters:

requirementLevel - the requirement level

Returns:

the corresponding error type level

niceToString

public static String niceToString(CvMappingRule rule)

Creates a user-friendly string of a mapping rule.

Parameters:

rule - the cv mapping rule

Returns:

the string representation

toString

public static String toString(CvMappingRule rule)

Creates a string representation of a mapping rule.

Parameters:

rule - the cv mapping rule

Returns:

the string representation

See Also:

for a nicer string intended for humans

toString

public static String toString(List<CvTerm> terms)

isEqualTo

public static boolean isEqualTo(uk.ac.ebi.pride.utilities.ols.web.service.model.Term term,
                                Parameter param)

asParameter

public static Parameter asParameter(uk.ac.ebi.pride.utilities.ols.web.service.model.Term term)

isEqualTo

public static boolean isEqualTo(Parameter one,
                                Parameter two)

asParameter

public static Parameter asParameter(CvTerm term)