java.lang.Object
- uk.ac.ebi.pride.jmztab2.model.MZTabConstants

```
public final class MZTabConstants
extends Object
```
Define a couple of constants used in the jmzTab API.

Since:

08/03/13

Author:

qingwei, nilshoffmann

Field Summary

Fields
Modifier and Type	Field	Description
`static String`	`ABUNDANCE_PREFIX`	Constant `ABUNDANCE_PREFIX="abundance_"`
`static char`	`BAR`	Constant `BAR='\|'`
`static String`	`BAR_S`	Constant `BAR='\|'`
`static String`	`CALCULATE_ERROR`	Constant `CALCULATE_ERROR="NaN"`
`static char`	`COLON`	Constant `COLON=':'`
`static char`	`COMMA`	Constant `COMMA=','`
`static String`	`CV_PREFIX`	Constant `CV_PREFIX="cv_"`
`static String`	`GLOBAL`	Constant `GLOBAL="global"`
`static String`	`INFINITY`	Constant `INFINITY="INF"`
`static char`	`MINUS`	Constant `MINUS='-'`
`static String`	`NEW_LINE`	Constant `NEW_LINE="System.getProperty(line.separator)"`
`static String`	`NULL`	Constant `NULL="null"`
`static String`	`OPT_PREFIX`	Constant `OPT_PREFIX="opt_"`
`static String`	`REGEX_ABUNDANCE_ASSAY_COLUMN_NAME`	Constant `REGEX_ABUNDANCE_ASSAY_COLUMN_NAME="assay\\[(\\d+)\\]"`
`static String`	`REGEX_ABUNDANCE_COLUMN_NAME`	Constant `REGEX_ABUNDANCE_COLUMN_NAME="abundance_(.+)"`
`static String`	`REGEX_ADDUCT`	Constant `REGEX_ADDUCT="^\[\dM([+-][\w\d]+)\]\d*[+-]$"`
`static String`	`REGEX_CV_PARAM_OPT_COLUMN_NAME`	Constant `REGEX_CV_PARAM_OPT_COLUMN_NAME="cv(_([A-Za-z0-9\\-\\[\\]:\\.]+))?`
`static String`	`REGEX_DEFAULT_RELIABILITY`	Constant `REGEX_DEFAULT_RELIABILITY="[1234]{1}"`
`static String`	`REGEX_EMAIL`	Constant `REGEX_EMAIL="[_A-Za-z0-9-]+(\\.`
`static String`	`REGEX_INDEXED_VALUE`	Constant `REGEX_INDEXED_VALUE="\\[(\\d+)\\]"`
`static String`	`REGEX_MZTAB_M`	Constant `REGEX_MZTAB_M="(?<major>[2]{1})\\.(?<minor>\\d{1})\\.(?<micro>\\d{1})-(?<profile>[M]{1})"`
`static String`	`REGEX_NORMAL_METADATA`	Constant `REGEX_NORMAL_METADATA="(\\w+)(\\[(\\w+)\\])?`
`static String`	`REGEX_OPT_COLUMN_NAME`	Constant `REGEX_OPT_COLUMN_NAME="opt_((assay\|study_variable\|ms_run)\\[(\\w+)\\]\|global)_([A-Za-z0-9_\\-\\[\\]:\\.]+)"`
`static String`	`REGEX_PARAM_SPLIT`	Constant `REGEX_PARAM_SPLIT=",(?`
`static String`	`REGEX_SPECTRA_REF_FILE`	Constant `REGEX_SPECTRA_REF_FILE = "file=[\\w]+"`
`static String`	`REGEX_SPECTRA_REF_INDEX`	Constant `REGEX_SPECTRA_REF_INDEX = "index=[\\d]+"`
`static String`	`REGEX_SPECTRA_REF_MZML_UNIQUE`	Constant `REGEX_SPECTRA_REF_MZML_UNIQUE = "[\\w]+"`
`static String`	`REGEX_SPECTRA_REF_SCAN`	Constant `REGEX_SPECTRA_REF_SCAN = "scan=[\\d]+"`
`static String`	`REGEX_SPECTRA_REF_SPECTRUM`	Constant `REGEX_SPECTRA_REF_SPECTRUM = "spectrum=[\\d]+"`
`static String`	`REGEX_SPECTRA_REF_THERMO_NATIVE`	Constant `REGEX_SPECTRA_REF_THERMO_NATIVE = "controllerType=[\\d]+ controllerNumber=[1-9]\\d* scan=[1-9]\\d*"`
`static String`	`REGEX_SPECTRA_REF_WATERS_NATIVE`	Constant `REGEX_SPECTRA_REF_WATERS_NATIVE = "function=[1-9]\\d* process=[\\d]+ scan=[\\d]+"`
`static String`	`REGEX_SPECTRA_REF_WIFF_NATIVE`	Constant `REGEX_SPECTRA_REF_WIFF_NATIVE = "sample=[\\d]+ period=[\\d]+ cycle=[\\d]+ experiment=[\\d]+"`
`static String`	`REGEX_STUDY_VARIABLE_COLUMN_NAME`	Constant `REGEX_STUDY_VARIABLE_COLUMN_NAME="study_variable\\[(\\d+)\\]"`
`static char`	`TAB`	Constant `TAB=' '`
`static String`	`TAB_STRING`	Constant `TABs=""+' '`
`static String`	`VERSION_MZTAB_M`	Constant `VERSION="2.0.0-M"`

Constructor Summary

Constructors
Constructor Description

MZTabConstants()

Method Summary
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - NEW_LINE
```
public static final String NEW_LINE
```
    Constant NEW_LINE="System.getProperty(line.separator)"
    
    See Also:
    
    Constant Field Values
  - NULL
```
public static final String NULL
```
    Constant NULL="null"
    
    See Also:
    
    Constant Field Values
  - INFINITY
```
public static final String INFINITY
```
    Constant INFINITY="INF"
    
    See Also:
    
    Constant Field Values
  - CALCULATE_ERROR
```
public static final String CALCULATE_ERROR
```
    Constant CALCULATE_ERROR="NaN"
    
    See Also:
    
    Constant Field Values
  - TAB
```
public static final char TAB
```
    Constant TAB=' '
    
    See Also:
    
    Constant Field Values
  - TAB_STRING
```
public static final String TAB_STRING
```
    Constant TABs=""+' '
    
    See Also:
    
    Constant Field Values
  - MINUS
```
public static final char MINUS
```
    Constant MINUS='-'
    
    See Also:
    
    Constant Field Values
  - BAR
```
public static final char BAR
```
    Constant BAR='|'
    
    See Also:
    
    Constant Field Values
  - BAR_S
```
public static final String BAR_S
```
    Constant BAR='|'
    
    See Also:
    
    Constant Field Values
  - COLON
```
public static final char COLON
```
    Constant COLON=':'
    
    See Also:
    
    Constant Field Values
  - COMMA
```
public static final char COMMA
```
    Constant COMMA=','
    
    See Also:
    
    Constant Field Values
  - VERSION_MZTAB_M
```
public static final String VERSION_MZTAB_M
```
    Constant VERSION="2.0.0-M"
    
    See Also:
    
    Constant Field Values
  - OPT_PREFIX
```
public static final String OPT_PREFIX
```
    Constant OPT_PREFIX="opt_"
    
    See Also:
    
    Constant Field Values
  - ABUNDANCE_PREFIX
```
public static final String ABUNDANCE_PREFIX
```
    Constant ABUNDANCE_PREFIX="abundance_"
    
    See Also:
    
    Constant Field Values
  - GLOBAL
```
public static final String GLOBAL
```
    Constant GLOBAL="global"
    
    See Also:
    
    Constant Field Values
  - CV_PREFIX
```
public static final String CV_PREFIX
```
    Constant CV_PREFIX="cv_"
    
    See Also:
    
    Constant Field Values
  - REGEX_INDEXED_VALUE
```
public static final String REGEX_INDEXED_VALUE
```
    Constant REGEX_INDEXED_VALUE="\\[(\\d+)\\]"
    
    See Also:
    
    Constant Field Values
  - REGEX_CV_PARAM_OPT_COLUMN_NAME
```
public static final String REGEX_CV_PARAM_OPT_COLUMN_NAME
```
    Constant REGEX_CV_PARAM_OPT_COLUMN_NAME="cv(_([A-Za-z0-9\\-\\[\\]:\\.]+))?(_([A-Za-z0-9_\\-\\[\\]:\\.]+)*)"
    
    See Also:
    
    Constant Field Values
  - REGEX_OPT_COLUMN_NAME
```
public static final String REGEX_OPT_COLUMN_NAME
```
    Constant REGEX_OPT_COLUMN_NAME="opt_((assay|study_variable|ms_run)\\[(\\w+)\\]|global)_([A-Za-z0-9_\\-\\[\\]:\\.]+)"
    
    See Also:
    
    Constant Field Values
  - REGEX_ABUNDANCE_COLUMN_NAME
```
public static final String REGEX_ABUNDANCE_COLUMN_NAME
```
    Constant REGEX_ABUNDANCE_COLUMN_NAME="abundance_(.+)"
    
    See Also:
    
    Constant Field Values
  - REGEX_ABUNDANCE_ASSAY_COLUMN_NAME
```
public static final String REGEX_ABUNDANCE_ASSAY_COLUMN_NAME
```
    Constant REGEX_ABUNDANCE_ASSAY_COLUMN_NAME="assay\\[(\\d+)\\]"
    
    See Also:
    
    Constant Field Values
  - REGEX_STUDY_VARIABLE_COLUMN_NAME
```
public static final String REGEX_STUDY_VARIABLE_COLUMN_NAME
```
    Constant REGEX_STUDY_VARIABLE_COLUMN_NAME="study_variable\\[(\\d+)\\]"
    
    See Also:
    
    Constant Field Values
  - REGEX_NORMAL_METADATA
```
public static final String REGEX_NORMAL_METADATA
```
    Constant REGEX_NORMAL_METADATA="(\\w+)(\\[(\\w+)\\])?(-(\\w+)(\\[(\\w+)\\])?)?(-(\\w+))?"
    
    See Also:
    
    Constant Field Values
  - REGEX_EMAIL
```
public static final String REGEX_EMAIL
```
    Constant REGEX_EMAIL="[_A-Za-z0-9-]+(\\.[_A-Za-z0-9-']+)*@[A-Za-z0-9]+(?:[-.][A-Za-z0-9]+)*(\\.[A-Za-z]{2,})"
    
    See Also:
    
    Constant Field Values
  - REGEX_MZTAB_M
```
public static final String REGEX_MZTAB_M
```
    Constant REGEX_MZTAB_M="(?<major>[2]{1})\\.(?<minor>\\d{1})\\.(?<micro>\\d{1})-(?<profile>[M]{1})"
    
    See Also:
    
    Constant Field Values
  - REGEX_PARAM_SPLIT
```
public static final String REGEX_PARAM_SPLIT
```
    Constant REGEX_PARAM_SPLIT=",(?=([^\"]*\"[^\"]*\")*[^\"]*$)"
    
    See Also:
    
    Constant Field Values
  - REGEX_DEFAULT_RELIABILITY
```
public static final String REGEX_DEFAULT_RELIABILITY
```
    Constant REGEX_DEFAULT_RELIABILITY="[1234]{1}"
    
    See Also:
    
    Constant Field Values
  - REGEX_ADDUCT
```
public static final String REGEX_ADDUCT
```
    Constant REGEX_ADDUCT="^\[\d*M([+-][\w\d]+)*\]\d*[+-]$"
    
    See Also:
    
    Constant Field Values
  - REGEX_SPECTRA_REF_THERMO_NATIVE
```
public static final String REGEX_SPECTRA_REF_THERMO_NATIVE
```
    Constant REGEX_SPECTRA_REF_THERMO_NATIVE = "controllerType=[\\d]+ controllerNumber=[1-9]\\d* scan=[1-9]\\d*"
    
    See Also:
    
    Constant Field Values
  - REGEX_SPECTRA_REF_WATERS_NATIVE
```
public static final String REGEX_SPECTRA_REF_WATERS_NATIVE
```
    Constant REGEX_SPECTRA_REF_WATERS_NATIVE = "function=[1-9]\\d* process=[\\d]+ scan=[\\d]+"
    
    See Also:
    
    Constant Field Values
  - REGEX_SPECTRA_REF_WIFF_NATIVE
```
public static final String REGEX_SPECTRA_REF_WIFF_NATIVE
```
    Constant REGEX_SPECTRA_REF_WIFF_NATIVE = "sample=[\\d]+ period=[\\d]+ cycle=[\\d]+ experiment=[\\d]+"
    
    See Also:
    
    Constant Field Values
  - REGEX_SPECTRA_REF_INDEX
```
public static final String REGEX_SPECTRA_REF_INDEX
```
    Constant REGEX_SPECTRA_REF_INDEX = "index=[\\d]+"
    
    See Also:
    
    Constant Field Values
  - REGEX_SPECTRA_REF_FILE
```
public static final String REGEX_SPECTRA_REF_FILE
```
    Constant REGEX_SPECTRA_REF_FILE = "file=[\\w]+"
    
    See Also:
    
    Constant Field Values
  - REGEX_SPECTRA_REF_SPECTRUM
```
public static final String REGEX_SPECTRA_REF_SPECTRUM
```
    Constant REGEX_SPECTRA_REF_SPECTRUM = "spectrum=[\\d]+"
    
    See Also:
    
    Constant Field Values
  - REGEX_SPECTRA_REF_MZML_UNIQUE
```
public static final String REGEX_SPECTRA_REF_MZML_UNIQUE
```
    Constant REGEX_SPECTRA_REF_MZML_UNIQUE = "[\\w]+"
    
    See Also:
    
    Constant Field Values
  - REGEX_SPECTRA_REF_SCAN
```
public static final String REGEX_SPECTRA_REF_SCAN
```
    Constant REGEX_SPECTRA_REF_SCAN = "scan=[\\d]+"
    
    See Also:
    
    Constant Field Values
- Constructor Detail
  - MZTabConstants
```
public MZTabConstants()
```

Class MZTabConstants

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

NEW_LINE

NULL

INFINITY

CALCULATE_ERROR

TAB

TAB_STRING

MINUS

BAR

BAR_S

COLON

COMMA

VERSION_MZTAB_M

OPT_PREFIX

ABUNDANCE_PREFIX

GLOBAL

CV_PREFIX

REGEX_INDEXED_VALUE

REGEX_CV_PARAM_OPT_COLUMN_NAME

REGEX_OPT_COLUMN_NAME

REGEX_ABUNDANCE_COLUMN_NAME

REGEX_ABUNDANCE_ASSAY_COLUMN_NAME

REGEX_STUDY_VARIABLE_COLUMN_NAME

REGEX_NORMAL_METADATA

REGEX_EMAIL

REGEX_MZTAB_M

REGEX_PARAM_SPLIT

REGEX_DEFAULT_RELIABILITY

REGEX_ADDUCT

REGEX_SPECTRA_REF_THERMO_NATIVE

REGEX_SPECTRA_REF_WATERS_NATIVE

REGEX_SPECTRA_REF_WIFF_NATIVE

REGEX_SPECTRA_REF_INDEX

REGEX_SPECTRA_REF_FILE

REGEX_SPECTRA_REF_SPECTRUM

REGEX_SPECTRA_REF_MZML_UNIQUE

REGEX_SPECTRA_REF_SCAN

Constructor Detail

MZTabConstants