Uses of Class
uk.ac.ebi.pride.jmztab2.model.MZTabColumn

Packages that use MZTabColumn

Package	Description
uk.ac.ebi.pride.jmztab2.model	This package contains model classes for mzTab-M structural features like mandatory and optional columns.

Uses of MZTabColumn in uk.ac.ebi.pride.jmztab2.model

Subclasses of MZTabColumn in uk.ac.ebi.pride.jmztab2.model

Modifier and Type	Class	Description
class	AbundanceColumn	If the data exporter wishes to report only final results for 'Summary' files (i.e. following averaging over replicates), then these MUST be reported as quantitative values in the columns associated with the study_variable[1-n] (e.g.
class	OptionColumn	Additional columns can be added to the end of the protein table.
class	ParameterOptionColumn	An kind of OptionColumn which use CV parameter accessions in following the format: opt_{OBJECT_ID}_cv_{accession}_{parameter name}.

Methods in uk.ac.ebi.pride.jmztab2.model that return MZTabColumn

Modifier and Type	Method	Description
static MZTabColumn	AbundanceColumn.createOptionalColumn(Section section, Assay assay, int offset)	Generate a abundance optional column as measured in the given assay.The column header like protein_abundance_assay[1-n], the position always stay the most right of the tabled section, and the data type is Double.

Methods in uk.ac.ebi.pride.jmztab2.model that return types with arguments of type MZTabColumn

Modifier and Type	Method	Description
static SortedMap<String,MZTabColumn>	AbundanceColumn.createOptionalColumns(Section section, StudyVariable studyVariable, Integer lastOrder)	createOptionalColumns.
static SortedMap<String,MZTabColumn>	AbundanceColumn.createOptionalColumns(Section section, StudyVariable studyVariable, String columnHeader, String order)	Generate an abundance optional column as measured in the given study variable.