Uses of Class
uk.ac.ebi.pride.jmztab2.model.Section

Packages that use Section

Package	Description
uk.ac.ebi.pride.jmztab2.model	This package contains model classes for mzTab-M structural features like mandatory and optional columns.
uk.ac.ebi.pride.jmztab2.utils.parser	This package contains text file line parser implementations for the mzTab-M document sections.

Uses of Section in uk.ac.ebi.pride.jmztab2.model

Methods in uk.ac.ebi.pride.jmztab2.model that return Section

Modifier and Type	Method	Description
static Section	Section.findSection(int level)	findSection.
static Section	Section.findSection(String key)	Query section based on its name or prefix with case-insensitive.
static Section	Section.toDataSection(Section section)	Translate the section to corresponding data section.
static Section	Section.toHeaderSection(Section section)	Translate the section to corresponding header section.
static Section	Section.valueOf(String name)	Returns the enum constant of this type with the specified name.
static Section[]	Section.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in uk.ac.ebi.pride.jmztab2.model with parameters of type Section

Modifier and Type	Method	Description
static MZTabColumn	AbundanceColumn.createOptionalColumn(Section section, Assay assay, int offset)	Generate a abundance optional column as measured in the given assay.The column header like protein_abundance_assay[1-n], the position always stay the most right of the tabled section, and the data type is Double.
static SortedMap<String,MZTabColumn>	AbundanceColumn.createOptionalColumns(Section section, StudyVariable studyVariable, Integer lastOrder)	createOptionalColumns.
static SortedMap<String,MZTabColumn>	AbundanceColumn.createOptionalColumns(Section section, StudyVariable studyVariable, String columnHeader, String order)	Generate an abundance optional column as measured in the given study variable.
static MZTabColumnFactory	MZTabColumnFactory.getInstance(Section section)	Retrieves the MZTabColumnFactory accordingly to the MZTabColumnFactory.section
static Section	Section.toDataSection(Section section)	Translate the section to corresponding data section.
static Section	Section.toHeaderSection(Section section)	Translate the section to corresponding header section.

Uses of Section in uk.ac.ebi.pride.jmztab2.utils.parser

Fields in uk.ac.ebi.pride.jmztab2.utils.parser declared as Section

Modifier and Type	Field	Description
protected Section	MZTabLineParser.section

Methods in uk.ac.ebi.pride.jmztab2.utils.parser with parameters of type Section

Modifier and Type	Method	Description
protected void	MZTabHeaderLineParser.refineOptionalColumn(Section section, String columnHeader)	Refine optional columns and check, whether they were properly defined.