Package uk.ac.ebi.pride.jmztab2.utils.errors
This package contains error type definitions and related classes used during mzTab validation.
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Class Summary Class Description CrossCheckErrorType Provide crosscheck service, that is parse the consistent between current mztab file and some other resource (eg, database, xml file and so on).FormatErrorType Diagnose different types of format-related (reporting format problems).LogicalErrorType Reporting errors related to the logical relationships among the different sections in a file.MZTabError mzTab files can be validated to ensure that they comply with the latest version of the format specification.MZTabErrorList A limit max capacity list, if contains a couple ofMZTabError
objects.MZTabErrorType MZTabErrorType class.MZTabErrorTypeMap This list class used to storage all types of MZTabError, and provide query service based on the error/warn code. -
Enum Summary Enum Description MZTabErrorType.Category MZTabErrorType.Level We classify diagnosis message types into three levels: Info, Warn and Error, all of them coming from the notational conventions of the specification. -
Exception Summary Exception Description MZTabConversionException Runtime exception for mzTab conversionMZTabErrorOverflowException If error count great thanMZTabProperties.MAX_ERROR_COUNT
System will stop validate and throw overflow exception.MZTabException Wrap aMZTabError
.