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A

addCheckOption(Options) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

addCheckSemanticOption(Options) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

addDeserializeOption(Options) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

addHelpOption(Options) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

addLevelOption(Options) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

addMessageOption(Options) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

addOutFileOption(Options) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

addSerializeOption(Options) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

addVersionOption(Options) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

D

de.isas.mztab2.cli - package de.isas.mztab2.cli

This package contains the command line interface for jmzTab-M validation and conversion.

H

handleMsgOption(CommandLine, String, MZTabErrorTypeMap) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

handleSemanticValidation(CommandLine, String, File, PrintStream, MzTabFileParser, MZTabErrorType.Level) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

handleValidation(CommandLine, String, PrintStream, MZTabErrorType.Level, String, boolean, boolean) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

handleValidationOptions(CommandLine, String, String, String, String, String, String) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

M

main(String[]) - Static method in class de.isas.mztab2.cli.MZTabCommandLine

Runs the command line parser for mzTab, including validation.

MZTabCommandLine - Class in de.isas.mztab2.cli

MZTabCommandLine class.

MZTabCommandLine() - Constructor for class de.isas.mztab2.cli.MZTabCommandLine

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