A C D E F G H I J M N O P R S T U V W X
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A

addConstraintAndValidator(Class<A>, Class<V>, boolean) - Method in class de.isas.mztab2.validation.MzTabBeanValidator

Allows registration of custom constraint / validator pairs on the validation configuration.

addConstraintAndValidator(Class<T>, Class<A>, Class<V>, boolean) - Method in class de.isas.mztab2.validation.MzTabBeanValidator

Allows registration of custom constraint / validator pairs on the validation configuration for a specific (unannotated) type.

allowChildren - Variable in class info.psidev.cvmapping.CvTerm

AND - info.psidev.cvmapping.CvMappingRule.CvTermsCombinationLogic

AndValidationHandler - Class in de.isas.mztab2.validation.handlers

Implements 'AND' logic, meaning all alternative possible terms or term roots for an object must occur.

AndValidationHandler() - Constructor for class de.isas.mztab2.validation.handlers.AndValidationHandler

asParameter(CvTerm) - Static method in class de.isas.mztab2.cvmapping.CvMappingUtils

asParameter(Term) - Static method in class de.isas.mztab2.cvmapping.CvMappingUtils

C

CHILD_OF - de.isas.mztab2.cvmapping.ParameterComparisonResult

clearCaches() - Method in class de.isas.mztab2.cvmapping.CvParameterLookupService

Clears all query result caches (parent and child).

complement(Set<T>, Set<T>) - Static method in class de.isas.mztab2.cvmapping.SetOperations

Returns the complement (a without elements also in b) of a and b.

createCvMapping() - Method in class info.psidev.cvmapping.ObjectFactory

Create an instance of CvMapping

createCvMappingCvMappingRuleList() - Method in class info.psidev.cvmapping.ObjectFactory

Create an instance of CvMapping.CvMappingRuleList

createCvMappingCvReferenceList() - Method in class info.psidev.cvmapping.ObjectFactory

Create an instance of CvMapping.CvReferenceList

createCvMappingRule() - Method in class info.psidev.cvmapping.ObjectFactory

Create an instance of CvMappingRule

createCvReference() - Method in class info.psidev.cvmapping.ObjectFactory

Create an instance of CvReference

createCvTerm() - Method in class info.psidev.cvmapping.ObjectFactory

Create an instance of CvTerm

CvDefinitionValidationHandler - Class in de.isas.mztab2.validation

Validates that controlled vocabularies used by parameters are defined in the metadata CV section.

CvDefinitionValidationHandler() - Constructor for class de.isas.mztab2.validation.CvDefinitionValidationHandler

cvElementPath - Variable in class info.psidev.cvmapping.CvMappingRule

cvIdentifier - Variable in class info.psidev.cvmapping.CvReference

cvIdentifierRef - Variable in class info.psidev.cvmapping.CvTerm

CvMapping - Class in info.psidev.cvmapping

Java-Klasse für anonymous complex type.

CvMapping() - Constructor for class info.psidev.cvmapping.CvMapping

CvMapping.CvMappingRuleList - Class in info.psidev.cvmapping

Java-Klasse für anonymous complex type.

CvMapping.CvReferenceList - Class in info.psidev.cvmapping

Java-Klasse für anonymous complex type.

cvMappingRule - Variable in class info.psidev.cvmapping.CvMapping.CvMappingRuleList

CvMappingRule - Class in info.psidev.cvmapping

Java-Klasse für anonymous complex type.

CvMappingRule() - Constructor for class info.psidev.cvmapping.CvMappingRule

CvMappingRule.CvTermsCombinationLogic - Enum in info.psidev.cvmapping

Java-Klasse für null.

CvMappingRule.RequirementLevel - Enum in info.psidev.cvmapping

Java-Klasse für null.

cvMappingRuleList - Variable in class info.psidev.cvmapping.CvMapping

CvMappingRuleList() - Constructor for class info.psidev.cvmapping.CvMapping.CvMappingRuleList

CvMappingUtils - Class in de.isas.mztab2.cvmapping

Utility methods for conversion between the mapping file domain and the mzTab domain.

CvMappingUtils() - Constructor for class de.isas.mztab2.cvmapping.CvMappingUtils

CvMappingValidator - Class in de.isas.mztab2.validation

Validator implementation that uses a provided xml mapping file with rules for required, recommended and optional CV parameters to assert that an mzTab follows these rules.

CvMappingValidator() - Constructor for class de.isas.mztab2.validation.CvMappingValidator

cvName - Variable in class info.psidev.cvmapping.CvReference

CvParameterLookupService - Class in de.isas.mztab2.cvmapping

Abstraction over OLSClient to autoconvert Terms to Parameters and to allow easy matching of Parameters against parent terms and their children.

CvParameterLookupService() - Constructor for class de.isas.mztab2.cvmapping.CvParameterLookupService

Create a new instance of the lookup service with default OLS configuration.

CvParameterLookupService(OLSClient) - Constructor for class de.isas.mztab2.cvmapping.CvParameterLookupService

Create a new instance of the lookup service with a custom OLSClient.

CvParameterLookupService(OLSWsConfig) - Constructor for class de.isas.mztab2.cvmapping.CvParameterLookupService

Create a new instance of the lookup service with a custom OLSWsConfig configuration.

cvReference - Variable in class info.psidev.cvmapping.CvMapping.CvReferenceList

CvReference - Class in info.psidev.cvmapping

Java-Klasse für anonymous complex type.

CvReference() - Constructor for class info.psidev.cvmapping.CvReference

cvReferenceList - Variable in class info.psidev.cvmapping.CvMapping

CvReferenceList() - Constructor for class info.psidev.cvmapping.CvMapping.CvReferenceList

CvRuleHandler - Interface in de.isas.mztab2.validation

Interface for rule logic handling implementations.

cvSourceVersion - Variable in class info.psidev.cvmapping.CvMapping.CvReferenceList

cvTerm - Variable in class info.psidev.cvmapping.CvMappingRule

CvTerm - Class in info.psidev.cvmapping

Java-Klasse für anonymous complex type.

CvTerm() - Constructor for class info.psidev.cvmapping.CvTerm

cvTermsCombinationLogic - Variable in class info.psidev.cvmapping.CvMappingRule

CvTermSelectionHandler - Interface in de.isas.mztab2.validation

Interface for JxPath subtree selection handling.

CvTermValidationHandler - Interface in de.isas.mztab2.validation

Interface for handling of rule evaluation results.

D

de.isas.mztab2.cvmapping - package de.isas.mztab2.cvmapping

This package contains classes for controlled vocabulary term access, comparison, results and external cv parameter resolution.

de.isas.mztab2.validation - package de.isas.mztab2.validation

This package contains interfaces and implementations for the semantic validation via CvTerms.

de.isas.mztab2.validation.handlers - package de.isas.mztab2.validation.handlers

This package contains implementations for the semantic validation controlled vocabulary term rules.

E

EmptyRuleHandler - Class in de.isas.mztab2.validation.handlers

Implements handling of rules that have no cv parameter match.

EmptyRuleHandler() - Constructor for class de.isas.mztab2.validation.handlers.EmptyRuleHandler

ExtraParametersValidationHandler - Class in de.isas.mztab2.validation.handlers

Implements handling of cv parameters (not user params) that are found at the object.

ExtraParametersValidationHandler() - Constructor for class de.isas.mztab2.validation.handlers.ExtraParametersValidationHandler

F

fromValue(String) - Static method in enum info.psidev.cvmapping.CvMappingRule.CvTermsCombinationLogic

fromValue(String) - Static method in enum info.psidev.cvmapping.CvMappingRule.RequirementLevel

G

getCvElementPath() - Method in class info.psidev.cvmapping.CvMappingRule

Ruft den Wert der cvElementPath-Eigenschaft ab.

getCvIdentifier() - Method in class info.psidev.cvmapping.CvReference

Ruft den Wert der cvIdentifier-Eigenschaft ab.

getCvIdentifierRef() - Method in class info.psidev.cvmapping.CvTerm

Ruft den Wert der cvIdentifierRef-Eigenschaft ab.

getCvMappingRule() - Method in class info.psidev.cvmapping.CvMapping.CvMappingRuleList

Single mapping rule between a specific elements of the model and to controlled vocabularies listed on the CvTerm element.Gets the value of the cvMappingRule property.

getCvMappingRuleList() - Method in class info.psidev.cvmapping.CvMapping

Ruft den Wert der cvMappingRuleList-Eigenschaft ab.

getCvName() - Method in class info.psidev.cvmapping.CvReference

Ruft den Wert der cvName-Eigenschaft ab.

getCvReference() - Method in class info.psidev.cvmapping.CvMapping.CvReferenceList

Description of a CV or ontology resource.Gets the value of the cvReference property.

getCvReferenceList() - Method in class info.psidev.cvmapping.CvMapping

Ruft den Wert der cvReferenceList-Eigenschaft ab.

getCvSourceVersion() - Method in class info.psidev.cvmapping.CvMapping.CvReferenceList

Ruft den Wert der cvSourceVersion-Eigenschaft ab.

getCvTerm() - Method in class info.psidev.cvmapping.CvMappingRule

One or more terms from a CVsource that are allowed to be associated with the given element of the model.

getCvTermsCombinationLogic() - Method in class info.psidev.cvmapping.CvMappingRule

Ruft den Wert der cvTermsCombinationLogic-Eigenschaft ab.

getId() - Method in class info.psidev.cvmapping.CvMappingRule

Ruft den Wert der id-Eigenschaft ab.

getModelName() - Method in class info.psidev.cvmapping.CvMapping

Ruft den Wert der modelName-Eigenschaft ab.

getModelURI() - Method in class info.psidev.cvmapping.CvMapping

Ruft den Wert der modelURI-Eigenschaft ab.

getModelVersion() - Method in class info.psidev.cvmapping.CvMapping

Ruft den Wert der modelVersion-Eigenschaft ab.

getName() - Method in class info.psidev.cvmapping.CvMappingRule

Ruft den Wert der name-Eigenschaft ab.

getPathLocatorString(ConstraintViolation<?>) - Method in class de.isas.mztab2.validation.MzTabBeanValidator

getPathLocatorString.

getRequirementLevel() - Method in class info.psidev.cvmapping.CvMappingRule

Ruft den Wert der requirementLevel-Eigenschaft ab.

getScopePath() - Method in class info.psidev.cvmapping.CvMappingRule

Ruft den Wert der scopePath-Eigenschaft ab.

getTermAccession() - Method in class info.psidev.cvmapping.CvTerm

Ruft den Wert der termAccession-Eigenschaft ab.

getTermName() - Method in class info.psidev.cvmapping.CvTerm

Ruft den Wert der termName-Eigenschaft ab.

H

handleParameters(RuleEvaluationResult, boolean) - Method in interface de.isas.mztab2.validation.CvTermValidationHandler

Implementations of this method should take care that they always return a list, even if it is empty.

handleParameters(RuleEvaluationResult, boolean) - Method in class de.isas.mztab2.validation.handlers.AndValidationHandler

handleParameters(RuleEvaluationResult, boolean) - Method in class de.isas.mztab2.validation.handlers.ExtraParametersValidationHandler

handleParameters(RuleEvaluationResult, boolean) - Method in class de.isas.mztab2.validation.handlers.OrValidationHandler

handleParameters(RuleEvaluationResult, boolean) - Method in class de.isas.mztab2.validation.handlers.SharedParametersValidationHandler

handleParameters(RuleEvaluationResult, boolean) - Method in class de.isas.mztab2.validation.handlers.XorValidationHandler

handleRule(CvMappingRule, List<Pair<Pointer, Parameter>>) - Method in interface de.isas.mztab2.validation.CvRuleHandler

Handle the provided rule according to the implementor's logic.

handleRule(CvMappingRule, List<Pair<Pointer, Parameter>>) - Method in class de.isas.mztab2.validation.handlers.EmptyRuleHandler

handleRule(CvMappingRule, List<Pair<Pointer, Parameter>>) - Method in class de.isas.mztab2.validation.handlers.ResolvingCvRuleHandler

handleSelection(List<Pair<Pointer, Parameter>>) - Method in class de.isas.mztab2.cvmapping.RemoveUserParams

handleSelection(List<Pair<Pointer, Parameter>>) - Method in interface de.isas.mztab2.validation.CvTermSelectionHandler

Handle the provided selection, e.g. by filtering it or by modifying elements therein.

I

id - Variable in class info.psidev.cvmapping.CvMappingRule

IDENTICAL - de.isas.mztab2.cvmapping.ParameterComparisonResult

info.psidev.cvmapping - package info.psidev.cvmapping

This package contains the generated Java objects created via XML binding from the PSI-MS mapping file schema.

intersection(Set<T>, Set<T>) - Static method in class de.isas.mztab2.cvmapping.SetOperations

Returns the intersection (a \cap b, all common elements) of a and b.

isAllowChildren() - Method in class info.psidev.cvmapping.CvTerm

Ruft den Wert der allowChildren-Eigenschaft ab.

isChildOfOrSame(Parameter, Parameter) - Method in class de.isas.mztab2.cvmapping.CvParameterLookupService

Compares two parameters for their parent to child relationship.

isEqualTo(Parameter, Parameter) - Static method in class de.isas.mztab2.cvmapping.CvMappingUtils

isEqualTo(Term, Parameter) - Static method in class de.isas.mztab2.cvmapping.CvMappingUtils

isIsRepeatable() - Method in class info.psidev.cvmapping.CvTerm

Ruft den Wert der isRepeatable-Eigenschaft ab.

isRepeatable - Variable in class info.psidev.cvmapping.CvTerm

isUseTerm() - Method in class info.psidev.cvmapping.CvTerm

Ruft den Wert der useTerm-Eigenschaft ab.

isUseTermName() - Method in class info.psidev.cvmapping.CvTerm

Ruft den Wert der useTermName-Eigenschaft ab.

J

JxPathElement - Class in de.isas.mztab2.cvmapping

Utility methods for simpler Java 8 compatible handling of JXPath selections and pointers.

JxPathElement() - Constructor for class de.isas.mztab2.cvmapping.JxPathElement

M

MAY - info.psidev.cvmapping.CvMappingRule.RequirementLevel

modelName - Variable in class info.psidev.cvmapping.CvMapping

modelURI - Variable in class info.psidev.cvmapping.CvMapping

modelVersion - Variable in class info.psidev.cvmapping.CvMapping

MUST - info.psidev.cvmapping.CvMappingRule.RequirementLevel

MzTabBeanValidator - Class in de.isas.mztab2.validation

This validator used the HibernateValidator bean validation reference implementation.

MzTabBeanValidator() - Constructor for class de.isas.mztab2.validation.MzTabBeanValidator

Default constructor.

MzTabBeanValidator(boolean) - Constructor for class de.isas.mztab2.validation.MzTabBeanValidator

Constructor setting up the validator configuration and default constraint mapping.

N

name - Variable in class info.psidev.cvmapping.CvMappingRule

newSet(Collection<? extends T>) - Static method in class de.isas.mztab2.cvmapping.SetOperations

Creates a new typed LinkedHashSet (preserving order of insertion) from the given collection.

niceToString(CvMappingRule) - Static method in class de.isas.mztab2.cvmapping.CvMappingUtils

Creates a user-friendly string of a mapping rule.

NOT_RELATED - de.isas.mztab2.cvmapping.ParameterComparisonResult

O

ObjectFactory - Class in info.psidev.cvmapping

This object contains factory methods for each Java content interface and Java element interface generated in the info.psidev.cvmapping package.

ObjectFactory() - Constructor for class info.psidev.cvmapping.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: info.psidev.cvmapping

of(CvMapping, CvParameterLookupService, boolean) - Static method in class de.isas.mztab2.validation.CvMappingValidator

Create a new instance of CvMappingValidator.

of(File, boolean) - Static method in class de.isas.mztab2.validation.CvMappingValidator

Create a new instance of CvMappingValidator.

of(File, CvParameterLookupService, boolean) - Static method in class de.isas.mztab2.validation.CvMappingValidator

Create a new instance of CvMappingValidator.

of(URL, boolean) - Static method in class de.isas.mztab2.validation.CvMappingValidator

Create a new instance of CvMappingValidator.

of(URL, CvParameterLookupService, boolean) - Static method in class de.isas.mztab2.validation.CvMappingValidator

Create a new instance of CvMappingValidator.

OR - info.psidev.cvmapping.CvMappingRule.CvTermsCombinationLogic

OrValidationHandler - Class in de.isas.mztab2.validation.handlers

Implements 'OR' logic, meaning alternative possible terms or term roots for an object may be present.

OrValidationHandler() - Constructor for class de.isas.mztab2.validation.handlers.OrValidationHandler

P

ParameterComparisonResult - Enum in de.isas.mztab2.cvmapping

Result of a comparison of a CvTerm T defined in a CvRule against the parameter P found via JXPath.

R

RemoveUserParams - Class in de.isas.mztab2.cvmapping

Removes user parameters from the provided selection.

RemoveUserParams() - Constructor for class de.isas.mztab2.cvmapping.RemoveUserParams

requirementLevel - Variable in class info.psidev.cvmapping.CvMappingRule

resolveChildren(Parameter) - Method in class de.isas.mztab2.cvmapping.CvParameterLookupService

Resolve all children of a parameter up to an arbitrary depth.

resolveChildren(Parameter, int) - Method in class de.isas.mztab2.cvmapping.CvParameterLookupService

Resolve all children of a parameter up to a given maximum depth (1 meaning immediate children, -1 meaning all).

resolveParents(Parameter) - Method in class de.isas.mztab2.cvmapping.CvParameterLookupService

Resolve all parents of parameter up to an arbitrary depth (actually height, since we go from bottom to top).

resolveParents(Parameter, int) - Method in class de.isas.mztab2.cvmapping.CvParameterLookupService

Resolve all parents of a parameter up to a given maximum depth (1 meaning the immediate parents, -1 meaning all).

ResolvingCvRuleHandler - Class in de.isas.mztab2.validation.handlers

Implements resolution of cv parameters using the provided lookup service.

ResolvingCvRuleHandler(CvParameterLookupService) - Constructor for class de.isas.mztab2.validation.handlers.ResolvingCvRuleHandler

RuleEvaluationResult - Class in de.isas.mztab2.cvmapping

Captures results of applying a rule to a parameter selection.

RuleEvaluationResult() - Constructor for class de.isas.mztab2.cvmapping.RuleEvaluationResult

S

scopePath - Variable in class info.psidev.cvmapping.CvMappingRule

setAllowChildren(boolean) - Method in class info.psidev.cvmapping.CvTerm

Legt den Wert der allowChildren-Eigenschaft fest.

setCvElementPath(String) - Method in class info.psidev.cvmapping.CvMappingRule

Legt den Wert der cvElementPath-Eigenschaft fest.

setCvIdentifier(String) - Method in class info.psidev.cvmapping.CvReference

Legt den Wert der cvIdentifier-Eigenschaft fest.

setCvIdentifierRef(CvReference) - Method in class info.psidev.cvmapping.CvTerm

Legt den Wert der cvIdentifierRef-Eigenschaft fest.

setCvMappingRuleList(CvMapping.CvMappingRuleList) - Method in class info.psidev.cvmapping.CvMapping

Legt den Wert der cvMappingRuleList-Eigenschaft fest.

setCvName(String) - Method in class info.psidev.cvmapping.CvReference

Legt den Wert der cvName-Eigenschaft fest.

setCvReferenceList(CvMapping.CvReferenceList) - Method in class info.psidev.cvmapping.CvMapping

Legt den Wert der cvReferenceList-Eigenschaft fest.

setCvSourceVersion(String) - Method in class info.psidev.cvmapping.CvMapping.CvReferenceList

Legt den Wert der cvSourceVersion-Eigenschaft fest.

setCvTermsCombinationLogic(CvMappingRule.CvTermsCombinationLogic) - Method in class info.psidev.cvmapping.CvMappingRule

Legt den Wert der cvTermsCombinationLogic-Eigenschaft fest.

setId(String) - Method in class info.psidev.cvmapping.CvMappingRule

Legt den Wert der id-Eigenschaft fest.

setIsRepeatable(Boolean) - Method in class info.psidev.cvmapping.CvTerm

Legt den Wert der isRepeatable-Eigenschaft fest.

setModelName(String) - Method in class info.psidev.cvmapping.CvMapping

Legt den Wert der modelName-Eigenschaft fest.

setModelURI(String) - Method in class info.psidev.cvmapping.CvMapping

Legt den Wert der modelURI-Eigenschaft fest.

setModelVersion(String) - Method in class info.psidev.cvmapping.CvMapping

Legt den Wert der modelVersion-Eigenschaft fest.

setName(String) - Method in class info.psidev.cvmapping.CvMappingRule

Legt den Wert der name-Eigenschaft fest.

SetOperations - Class in de.isas.mztab2.cvmapping

Utility methods for sets with common names.

SetOperations() - Constructor for class de.isas.mztab2.cvmapping.SetOperations

setRequirementLevel(CvMappingRule.RequirementLevel) - Method in class info.psidev.cvmapping.CvMappingRule

Legt den Wert der requirementLevel-Eigenschaft fest.

setScopePath(String) - Method in class info.psidev.cvmapping.CvMappingRule

Legt den Wert der scopePath-Eigenschaft fest.

setTermAccession(String) - Method in class info.psidev.cvmapping.CvTerm

Legt den Wert der termAccession-Eigenschaft fest.

setTermName(String) - Method in class info.psidev.cvmapping.CvTerm

Legt den Wert der termName-Eigenschaft fest.

setUseTerm(boolean) - Method in class info.psidev.cvmapping.CvTerm

Legt den Wert der useTerm-Eigenschaft fest.

setUseTermName(Boolean) - Method in class info.psidev.cvmapping.CvTerm

Legt den Wert der useTermName-Eigenschaft fest.

SharedParametersValidationHandler - Class in de.isas.mztab2.validation.handlers

Implements support for validating multiple parameters and the intersection between terms as described by the rule and the actually found ones.

SharedParametersValidationHandler() - Constructor for class de.isas.mztab2.validation.handlers.SharedParametersValidationHandler

SHOULD - info.psidev.cvmapping.CvMappingRule.RequirementLevel

symmetricDifference(Set<T>, Set<T>) - Static method in class de.isas.mztab2.cvmapping.SetOperations

Returns the symmetric set difference (union(complement(a,b),complement(b,a))) on a and b.

T

termAccession - Variable in class info.psidev.cvmapping.CvTerm

termName - Variable in class info.psidev.cvmapping.CvTerm

toErrorLevel(CvMappingRule.RequirementLevel) - Static method in class de.isas.mztab2.cvmapping.CvMappingUtils

Maps the provided requirement level to the corresponding MZTabErrorType.Level.

toList(JXPathContext, String, Class<? extends T>) - Static method in class de.isas.mztab2.cvmapping.JxPathElement

Returns the elements selected by the xpath expression from the provided JXPathContext as a list of the given object type.

toList(Pointer, Class<? extends T>) - Static method in class de.isas.mztab2.cvmapping.JxPathElement

Wrap the provided pointer as a list of the given object type.

toStream(Iterator<? extends T>) - Static method in class de.isas.mztab2.cvmapping.JxPathElement

Wraps the provided typed iterator into a stream, based on Spliterators.

toStream(Iterator, Class<? extends T>) - Static method in class de.isas.mztab2.cvmapping.JxPathElement

Creates a typed stream from an untyped (pre Java 6) iterator.

toStream(Pointer, Class<? extends T>) - Static method in class de.isas.mztab2.cvmapping.JxPathElement

Wrap the provided pointer as a stream of the given object type.

toString(CvMappingRule) - Static method in class de.isas.mztab2.cvmapping.CvMappingUtils

Creates a string representation of a mapping rule.

toString(List<CvTerm>) - Static method in class de.isas.mztab2.cvmapping.CvMappingUtils

typedIter(Iterator, Class<? extends T>) - Static method in class de.isas.mztab2.cvmapping.JxPathElement

Creates a typed iterator from an untyped (pre Java 6) iterator.

U

union(Set<T>, Set<T>) - Static method in class de.isas.mztab2.cvmapping.SetOperations

Returns the union (a+b) of a and b.

useTerm - Variable in class info.psidev.cvmapping.CvTerm

useTermName - Variable in class info.psidev.cvmapping.CvTerm

V

validate(MzTab) - Method in class de.isas.mztab2.validation.CvDefinitionValidationHandler

validate(MzTab) - Method in class de.isas.mztab2.validation.CvMappingValidator

validate(MzTab) - Method in class de.isas.mztab2.validation.MzTabBeanValidator

value() - Method in enum info.psidev.cvmapping.CvMappingRule.CvTermsCombinationLogic

value() - Method in enum info.psidev.cvmapping.CvMappingRule.RequirementLevel

valueOf(String) - Static method in enum de.isas.mztab2.cvmapping.ParameterComparisonResult

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum info.psidev.cvmapping.CvMappingRule.CvTermsCombinationLogic

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum info.psidev.cvmapping.CvMappingRule.RequirementLevel

Returns the enum constant of this type with the specified name.

values() - Static method in enum de.isas.mztab2.cvmapping.ParameterComparisonResult

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum info.psidev.cvmapping.CvMappingRule.CvTermsCombinationLogic

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum info.psidev.cvmapping.CvMappingRule.RequirementLevel

Returns an array containing the constants of this enum type, in the order they are declared.

W

withPostValidator(Validator<MzTab>) - Method in class de.isas.mztab2.validation.CvMappingValidator

Add the provided validator implementation to the list of validators that run last.

withPreValidator(Validator<MzTab>) - Method in class de.isas.mztab2.validation.CvMappingValidator

Add the provided validator implementation to the list of validators that run first.

X

XOR - info.psidev.cvmapping.CvMappingRule.CvTermsCombinationLogic

XorValidationHandler - Class in de.isas.mztab2.validation.handlers

Implements 'XOR' logic, meaning mutually exclusive alternative possible terms or term roots for an object are allowed.

XorValidationHandler() - Constructor for class de.isas.mztab2.validation.handlers.XorValidationHandler

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