Index

A

abundance_assay() (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) abundance_study_variable() (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) abundance_variation_study_variable() (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) accession() (swagger_client.models.publication_item.PublicationItem property) adduct_ion() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) adduct_ions() (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) affiliation() (swagger_client.models.contact.Contact property) analyzer() (swagger_client.models.instrument.Instrument property) ApiClient (class in swagger_client.api_client) ApiException Assay (class in swagger_client.models.assay) assay() (swagger_client.models.metadata.Metadata property) assay_refs() (swagger_client.models.study_variable.StudyVariable property) attribute_map (swagger_client.models.assay.Assay attribute) (swagger_client.models.column_parameter_mapping.ColumnParameterMapping attribute) (swagger_client.models.comment.Comment attribute) (swagger_client.models.contact.Contact attribute) (swagger_client.models.cv.CV attribute) (swagger_client.models.database.Database attribute) (swagger_client.models.error.Error attribute) (swagger_client.models.indexed_element.IndexedElement attribute) (swagger_client.models.instrument.Instrument attribute) (swagger_client.models.metadata.Metadata attribute) (swagger_client.models.ms_run.MsRun attribute) (swagger_client.models.mz_tab.MzTab attribute) (swagger_client.models.opt_column_mapping.OptColumnMapping attribute) (swagger_client.models.parameter.Parameter attribute) (swagger_client.models.publication.Publication attribute) (swagger_client.models.publication_item.PublicationItem attribute) (swagger_client.models.sample.Sample attribute) (swagger_client.models.sample_processing.SampleProcessing attribute) (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence attribute) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature attribute) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary attribute) (swagger_client.models.software.Software attribute) (swagger_client.models.spectra_ref.SpectraRef attribute) (swagger_client.models.string_list.StringList attribute) (swagger_client.models.study_variable.StudyVariable attribute) (swagger_client.models.uri.Uri attribute) (swagger_client.models.validation_message.ValidationMessage attribute)

auth_settings() (swagger_client.configuration.Configuration method) average_function() (swagger_client.models.study_variable.StudyVariable property)

B

best_id_confidence_measure() (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property)

best_id_confidence_value() (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property)

C

call_api() (swagger_client.api_client.ApiClient method) category() (swagger_client.models.validation_message.ValidationMessage property) cell_type() (swagger_client.models.sample.Sample property) charge() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) chemical_formula() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) chemical_name() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) code() (swagger_client.models.error.Error property) (swagger_client.models.validation_message.ValidationMessage property) column_name() (swagger_client.models.column_parameter_mapping.ColumnParameterMapping property) ColumnParameterMapping (class in swagger_client.models.column_parameter_mapping) colunit_small_molecule() (swagger_client.models.metadata.Metadata property) colunit_small_molecule_evidence() (swagger_client.models.metadata.Metadata property) colunit_small_molecule_feature() (swagger_client.models.metadata.Metadata property)

Comment (class in swagger_client.models.comment) comment() (swagger_client.models.mz_tab.MzTab property) (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) Configuration (class in swagger_client.configuration) conftest (module) Contact (class in swagger_client.models.contact) contact() (swagger_client.models.metadata.Metadata property) custom() (swagger_client.models.assay.Assay property) (swagger_client.models.metadata.Metadata property) (swagger_client.models.sample.Sample property) CV (class in swagger_client.models.cv) cv() (swagger_client.models.metadata.Metadata property) cv_accession() (swagger_client.models.parameter.Parameter property) cv_label() (swagger_client.models.parameter.Parameter property)

D

Database (class in swagger_client.models.database) database() (swagger_client.models.metadata.Metadata property) database_identifier() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) debug() (swagger_client.configuration.Configuration property) DELETE() (swagger_client.rest.RESTClientObject method) derivatization_agent() (swagger_client.models.metadata.Metadata property)

derivatized_form() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) description() (swagger_client.models.metadata.Metadata property) (swagger_client.models.sample.Sample property) (swagger_client.models.study_variable.StudyVariable property) deserialize() (swagger_client.api_client.ApiClient method) detector() (swagger_client.models.instrument.Instrument property) discriminator_value_class_map (swagger_client.models.indexed_element.IndexedElement attribute) disease() (swagger_client.models.sample.Sample property)

E

element_type() (swagger_client.models.indexed_element.IndexedElement property) email() (swagger_client.models.contact.Contact property) Error (class in swagger_client.models.error) evidence_input_id() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property)

exp_mass_to_charge() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) external_study_uri() (swagger_client.models.metadata.Metadata property) external_uri() (swagger_client.models.assay.Assay property)

F

factors() (swagger_client.models.study_variable.StudyVariable property) format() (swagger_client.models.ms_run.MsRun property)

fragmentation_method() (swagger_client.models.ms_run.MsRun property) full_name() (swagger_client.models.cv.CV property)

G

GET() (swagger_client.rest.RESTClientObject method) get_api_key_with_prefix() (swagger_client.configuration.Configuration method) get_basic_auth_token() (swagger_client.configuration.Configuration method) get_list_of() (in module mztab_parse.mztab_parser)

get_parameter() (in module mztab_parse.mztab_parser) get_real_child_model() (swagger_client.models.indexed_element.IndexedElement method) get_str() (in module mztab_parse.mztab_parser) getheader() (swagger_client.rest.RESTResponse method) getheaders() (swagger_client.rest.RESTResponse method)

H

hash() (swagger_client.models.ms_run.MsRun property) hash_method() (swagger_client.models.ms_run.MsRun property) HEAD() (swagger_client.rest.RESTClientObject method)

header_prefix() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property)

I

id() (swagger_client.models.indexed_element.IndexedElement property) id_confidence_measure() (swagger_client.models.metadata.Metadata property) (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) id_format() (swagger_client.models.ms_run.MsRun property) identification_method() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) identifier() (swagger_client.models.opt_column_mapping.OptColumnMapping property)

inchi() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) IndexedElement (class in swagger_client.models.indexed_element) Instrument (class in swagger_client.models.instrument) instrument() (swagger_client.models.metadata.Metadata property) instrument_ref() (swagger_client.models.ms_run.MsRun property) isotopomer() (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property)

L

label() (swagger_client.models.cv.CV property) line_number() (swagger_client.models.comment.Comment property) (swagger_client.models.validation_message.ValidationMessage property)

lines_with_Header() (in module mztab_parse.mztab_parser) location() (swagger_client.models.ms_run.MsRun property) logger_file() (swagger_client.configuration.Configuration property) logger_format() (swagger_client.configuration.Configuration property)

M

message() (swagger_client.models.error.Error property) (swagger_client.models.validation_message.ValidationMessage property) message_type() (swagger_client.models.validation_message.ValidationMessage property) Metadata (class in swagger_client.models.metadata) metadata() (swagger_client.models.mz_tab.MzTab property) ms_level() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) ms_run() (swagger_client.models.metadata.Metadata property) (swagger_client.models.spectra_ref.SpectraRef property)

ms_run_ref() (swagger_client.models.assay.Assay property) msg() (swagger_client.models.comment.Comment property) MsRun (class in swagger_client.models.ms_run) mz_tab_id() (swagger_client.models.metadata.Metadata property) mz_tab_version() (swagger_client.models.metadata.Metadata property) MzTab (class in swagger_client.models.mz_tab) mztab_parse (module) mztab_parse.mztab_parser (module)

N

name() (swagger_client.models.assay.Assay property) (swagger_client.models.contact.Contact property) (swagger_client.models.instrument.Instrument property) (swagger_client.models.ms_run.MsRun property) (swagger_client.models.parameter.Parameter property) (swagger_client.models.sample.Sample property) (swagger_client.models.study_variable.StudyVariable property)

NATIVE_TYPES_MAPPING (swagger_client.api_client.ApiClient attribute)

O

opt() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property)

OptColumnMapping (class in swagger_client.models.opt_column_mapping) OPTIONS() (swagger_client.rest.RESTClientObject method)

P

param() (swagger_client.models.column_parameter_mapping.ColumnParameterMapping property) (swagger_client.models.database.Database property) (swagger_client.models.opt_column_mapping.OptColumnMapping property) Parameter (class in swagger_client.models.parameter) parameter() (swagger_client.models.software.Software property) parameters_to_tuples() (swagger_client.api_client.ApiClient method) parse() (in module mztab_parse.mztab_parser) parseComments() (in module mztab_parse.mztab_parser) parseMetadata() (in module mztab_parse.mztab_parser) parseSmall_molecule_evidence() (in module mztab_parse.mztab_parser) parseSmall_molecule_feature() (in module mztab_parse.mztab_parser) parseSmall_molecule_summary() (in module mztab_parse.mztab_parser) PATCH() (swagger_client.rest.RESTClientObject method)

POST() (swagger_client.rest.RESTClientObject method) prefix() (swagger_client.models.comment.Comment property) (swagger_client.models.database.Database property) (swagger_client.models.metadata.Metadata property) (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) prepare_post_parameters() (swagger_client.api_client.ApiClient method) PRIMITIVE_TYPES (swagger_client.api_client.ApiClient attribute) Publication (class in swagger_client.models.publication) publication() (swagger_client.models.metadata.Metadata property) publication_items() (swagger_client.models.publication.Publication property) PublicationItem (class in swagger_client.models.publication_item) PUT() (swagger_client.rest.RESTClientObject method)

Q

quantification_method() (swagger_client.models.metadata.Metadata property)

R

rank() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) reference() (swagger_client.models.spectra_ref.SpectraRef property) reliability() (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) request() (swagger_client.api_client.ApiClient method) (swagger_client.rest.RESTClientObject method)

RESTClientObject (class in swagger_client.rest) RESTResponse (class in swagger_client.rest) retention_time_in_seconds() (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) retention_time_in_seconds_end() (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) retention_time_in_seconds_start() (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property)

S

Sample (class in swagger_client.models.sample) sample() (swagger_client.models.metadata.Metadata property) sample_processing() (swagger_client.models.metadata.Metadata property) (swagger_client.models.sample_processing.SampleProcessing property) sample_ref() (swagger_client.models.assay.Assay property) SampleProcessing (class in swagger_client.models.sample_processing) sanitize_for_serialization() (swagger_client.api_client.ApiClient method) scan_polarity() (swagger_client.models.ms_run.MsRun property) select_header_accept() (swagger_client.api_client.ApiClient method) select_header_content_type() (swagger_client.api_client.ApiClient method) set_default() (swagger_client.configuration.TypeWithDefault method) set_default_header() (swagger_client.api_client.ApiClient method) setting() (swagger_client.models.software.Software property) small_molecule_evidence() (swagger_client.models.mz_tab.MzTab property) small_molecule_feature() (swagger_client.models.mz_tab.MzTab property) small_molecule_feature_quantification_unit() (swagger_client.models.metadata.Metadata property) small_molecule_identification_reliability() (swagger_client.models.metadata.Metadata property) small_molecule_quantification_unit() (swagger_client.models.metadata.Metadata property) small_molecule_summary() (swagger_client.models.mz_tab.MzTab property) SmallMoleculeEvidence (class in swagger_client.models.small_molecule_evidence) SmallMoleculeFeature (class in swagger_client.models.small_molecule_feature) SmallMoleculeSummary (class in swagger_client.models.small_molecule_summary) sme_id() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) sme_id_ref_ambiguity_code() (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) sme_id_refs() (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) smf_id() (swagger_client.models.small_molecule_feature.SmallMoleculeFeature property) smf_id_refs() (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) smiles() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) sml_id() (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) Software (class in swagger_client.models.software) software() (swagger_client.models.metadata.Metadata property) source() (swagger_client.models.instrument.Instrument property) species() (swagger_client.models.sample.Sample property) spectra_ref() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) SpectraRef (class in swagger_client.models.spectra_ref) StringList (class in swagger_client.models.string_list) study_variable() (swagger_client.models.metadata.Metadata property) StudyVariable (class in swagger_client.models.study_variable) swagger_client (module) swagger_client.api (module) swagger_client.api.validate_api (module) swagger_client.api.validate_plain_api (module) swagger_client.api_client (module) swagger_client.configuration (module) swagger_client.models (module) swagger_client.models.assay (module) swagger_client.models.column_parameter_mapping (module) swagger_client.models.comment (module) swagger_client.models.contact (module)

swagger_client.models.cv (module) swagger_client.models.database (module) swagger_client.models.error (module) swagger_client.models.indexed_element (module) swagger_client.models.instrument (module) swagger_client.models.metadata (module) swagger_client.models.ms_run (module) swagger_client.models.mz_tab (module) swagger_client.models.opt_column_mapping (module) swagger_client.models.parameter (module) swagger_client.models.publication (module) swagger_client.models.publication_item (module) swagger_client.models.sample (module) swagger_client.models.sample_processing (module) swagger_client.models.small_molecule_evidence (module) swagger_client.models.small_molecule_feature (module) swagger_client.models.small_molecule_summary (module) swagger_client.models.software (module) swagger_client.models.spectra_ref (module) swagger_client.models.string_list (module) swagger_client.models.study_variable (module) swagger_client.models.uri (module) swagger_client.models.validation_message (module) swagger_client.rest (module) swagger_types (swagger_client.models.assay.Assay attribute) (swagger_client.models.column_parameter_mapping.ColumnParameterMapping attribute) (swagger_client.models.comment.Comment attribute) (swagger_client.models.contact.Contact attribute) (swagger_client.models.cv.CV attribute) (swagger_client.models.database.Database attribute) (swagger_client.models.error.Error attribute) (swagger_client.models.indexed_element.IndexedElement attribute) (swagger_client.models.instrument.Instrument attribute) (swagger_client.models.metadata.Metadata attribute) (swagger_client.models.ms_run.MsRun attribute) (swagger_client.models.mz_tab.MzTab attribute) (swagger_client.models.opt_column_mapping.OptColumnMapping attribute) (swagger_client.models.parameter.Parameter attribute) (swagger_client.models.publication.Publication attribute) (swagger_client.models.publication_item.PublicationItem attribute) (swagger_client.models.sample.Sample attribute) (swagger_client.models.sample_processing.SampleProcessing attribute) (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence attribute) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature attribute) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary attribute) (swagger_client.models.software.Software attribute) (swagger_client.models.spectra_ref.SpectraRef attribute) (swagger_client.models.string_list.StringList attribute) (swagger_client.models.study_variable.StudyVariable attribute) (swagger_client.models.uri.Uri attribute) (swagger_client.models.validation_message.ValidationMessage attribute)

T

theoretical_mass_to_charge() (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) theoretical_neutral_mass() (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property) tissue() (swagger_client.models.sample.Sample property) title() (swagger_client.models.metadata.Metadata property) to_debug_report() (swagger_client.configuration.Configuration method) to_dict() (swagger_client.models.assay.Assay method) (swagger_client.models.column_parameter_mapping.ColumnParameterMapping method) (swagger_client.models.comment.Comment method) (swagger_client.models.contact.Contact method) (swagger_client.models.cv.CV method) (swagger_client.models.database.Database method) (swagger_client.models.error.Error method) (swagger_client.models.indexed_element.IndexedElement method) (swagger_client.models.instrument.Instrument method) (swagger_client.models.metadata.Metadata method) (swagger_client.models.ms_run.MsRun method) (swagger_client.models.mz_tab.MzTab method) (swagger_client.models.opt_column_mapping.OptColumnMapping method) (swagger_client.models.parameter.Parameter method) (swagger_client.models.publication.Publication method) (swagger_client.models.publication_item.PublicationItem method) (swagger_client.models.sample.Sample method) (swagger_client.models.sample_processing.SampleProcessing method) (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence method) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature method) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary method) (swagger_client.models.software.Software method) (swagger_client.models.spectra_ref.SpectraRef method) (swagger_client.models.string_list.StringList method) (swagger_client.models.study_variable.StudyVariable method) (swagger_client.models.uri.Uri method) (swagger_client.models.validation_message.ValidationMessage method)

to_str() (swagger_client.models.assay.Assay method) (swagger_client.models.column_parameter_mapping.ColumnParameterMapping method) (swagger_client.models.comment.Comment method) (swagger_client.models.contact.Contact method) (swagger_client.models.cv.CV method) (swagger_client.models.database.Database method) (swagger_client.models.error.Error method) (swagger_client.models.indexed_element.IndexedElement method) (swagger_client.models.instrument.Instrument method) (swagger_client.models.metadata.Metadata method) (swagger_client.models.ms_run.MsRun method) (swagger_client.models.mz_tab.MzTab method) (swagger_client.models.opt_column_mapping.OptColumnMapping method) (swagger_client.models.parameter.Parameter method) (swagger_client.models.publication.Publication method) (swagger_client.models.publication_item.PublicationItem method) (swagger_client.models.sample.Sample method) (swagger_client.models.sample_processing.SampleProcessing method) (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence method) (swagger_client.models.small_molecule_feature.SmallMoleculeFeature method) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary method) (swagger_client.models.software.Software method) (swagger_client.models.spectra_ref.SpectraRef method) (swagger_client.models.string_list.StringList method) (swagger_client.models.study_variable.StudyVariable method) (swagger_client.models.uri.Uri method) (swagger_client.models.validation_message.ValidationMessage method) type() (swagger_client.models.publication_item.PublicationItem property) TypeWithDefault (class in swagger_client.configuration)

U

update_params_for_auth() (swagger_client.api_client.ApiClient method) Uri (class in swagger_client.models.uri) uri() (swagger_client.models.cv.CV property) (swagger_client.models.database.Database property) (swagger_client.models.metadata.Metadata property) (swagger_client.models.small_molecule_evidence.SmallMoleculeEvidence property) (swagger_client.models.small_molecule_summary.SmallMoleculeSummary property)

user_agent() (swagger_client.api_client.ApiClient property)

V

validate_mz_tab_file() (swagger_client.api.validate_api.ValidateApi method) validate_mz_tab_file_with_http_info() (swagger_client.api.validate_api.ValidateApi method) validate_plain_mz_tab_file() (swagger_client.api.validate_plain_api.ValidatePlainApi method) validate_plain_mz_tab_file_with_http_info() (swagger_client.api.validate_plain_api.ValidatePlainApi method) ValidateApi (class in swagger_client.api.validate_api) ValidatePlainApi (class in swagger_client.api.validate_plain_api)

ValidationMessage (class in swagger_client.models.validation_message) value() (swagger_client.models.opt_column_mapping.OptColumnMapping property) (swagger_client.models.parameter.Parameter property) (swagger_client.models.uri.Uri property) variation_function() (swagger_client.models.study_variable.StudyVariable property) version() (swagger_client.models.cv.CV property) (swagger_client.models.database.Database property)