Package de.isas.lipidomics.domain

This package contains the main common domain models for lipids.

Class Summary

Class	Description
Adduct	An adduct, generally, consists of a sum formula part, an adduct string, the charge and the charge sign.
ElementTable	Accounting table for chemical element frequency.
ExternalDatabaseReference	An external database reference for a lipid encodes the link to identify the referenced lipid, contains its native abbreviation and name, the database's element id and the name as normalized by Goslin / PaLiNom.
FattyAcid	A fatty acid with a specific type.
Fragment	A generic lipid fragment.
HeadGroup	This class represents functional head groups of lipids.
LipidAdduct	Base class for lipid names parsed using the different grammars.
LipidIsomericSubspecies	An isomeric subspecies.
LipidMolecularSubspecies	A molecular subspecies.
LipidSpecies	A lipid species is the factual root of the object hierarchy.
LipidSpeciesInfo	This class summarizes the FA parts of a lipid, independent of its head group.
LipidStructuralSubspecies	A structural subspecies.
ModificationsList

Enum Summary

Enum	Description
Element	Enumeration for typical chemical elements in lipids.
FattyAcidType
LipidCategory	The lipid category nomenclature follows the shorthand notation of
LipidClass	This class was generated by the LipidClassGenerator.
LipidFaBondType	The lipid fatty acyl bond types define how the FA is connected to the head group or which variant of a particular bond type it is.
LipidLevel	Defines the taxonomy of lipid levels, including UNDEFINED for lipids where the level can not be inferred or does not apply.