JavaDoc API documentation for the jgoslin data model and parser packages.

• The jgoslin GitHub project (this project).
• The Goslin project with grammars and documentation.
• The Python 3 implementation.
• The C++ 11 implementation.
• The R implementation (based on cppgoslin).

Package Overview

• PARSERS - The data model for the Goslin and the grammar-specific parser implementations.
• CLI - the command line interface for reading and translation of lipid shorthand nomenclature.

Goslin object model structure and object model mapping

Simplified Goslin object model. This model is shared between the different Goslin implementations.

For more information and for a table of the supported lipid classes, please consult the documentation

Packages

Package	Description
de.isas.lipidomics.domain	This package contains the main common domain models for lipids.
de.isas.lipidomics.generator	This package contains the code to generate the LipidClass class from lipid-list.csv.
de.isas.lipidomics.palinom	This package contains the parser implementations for the lipid grammars.
de.isas.lipidomics.palinom.cli	This package contains the command line interface for jgoslin.
de.isas.lipidomics.palinom.exceptions	This package contains custom exceptions used by the parser implementations.
de.isas.lipidomics.palinom.goslin	This package contains the parser implementation for the Goslin grammar.
de.isas.lipidomics.palinom.goslinfragments	This package contains the parser implementation for the Goslin Fragments grammar.
de.isas.lipidomics.palinom.hmdb	This package contains the parser implementation for the HMDB grammar.
de.isas.lipidomics.palinom.lipidmaps	This package contains the parser implementation for the LipidMaps grammar.
de.isas.lipidomics.palinom.sumformula	This package contains the parser implementation for the SumFormula grammar.
de.isas.lipidomics.palinom.swisslipids	This package contains the parser implementation for the SwissLipids grammar.