Package org.lifstools.jgoslin.domain

Class LipidCompleteStructure

java.lang.Object

org.lifstools.jgoslin.domain.LipidSpecies

org.lifstools.jgoslin.domain.LipidMolecularSpecies

org.lifstools.jgoslin.domain.LipidSnPosition

org.lifstools.jgoslin.domain.LipidStructureDefined

org.lifstools.jgoslin.domain.LipidFullStructure

org.lifstools.jgoslin.domain.LipidCompleteStructure

public class LipidCompleteStructure
extends LipidFullStructure

Complete structure level according to the 2020 update of the Liebisch shorthand nomenclature.

Author:

Dominik Kopczynski, Nils Hoffmann

See Also:

• LipidLevel

Field Summary

Fields inherited from class org.lifstools.jgoslin.domain.LipidSpecies

fa, faList, headGroup, info

Constructor Summary

Constructors

Constructor	Description
LipidCompleteStructure(Headgroup _headgroup, Collection<FattyAcid> _fa, KnownFunctionalGroups knownFunctionalGroups)
LipidCompleteStructure(Headgroup _headgroup, KnownFunctionalGroups knownFunctionalGroups)

Method Summary

Modifier and Type	Method	Description
LipidLevel	getLipidLevel()
String	getLipidString()	Returns the normalized lipid string on the native level.
String	getLipidString(LipidLevel level)	Returns the normalized lipid string on the provided level.

Methods inherited from class org.lifstools.jgoslin.domain.LipidMolecularSpecies

buildLipidSubspeciesName, buildLipidSubspeciesName, getElements

Methods inherited from class org.lifstools.jgoslin.domain.LipidSpecies

getExtendedClass, getFaList, getHeadGroup, getInfo

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LipidCompleteStructure

public LipidCompleteStructure(Headgroup _headgroup,
 KnownFunctionalGroups knownFunctionalGroups)

LipidCompleteStructure

public LipidCompleteStructure(Headgroup _headgroup,
 Collection<FattyAcid> _fa,
 KnownFunctionalGroups knownFunctionalGroups)

Method Details

getLipidLevel

public LipidLevel getLipidLevel()

Overrides:

getLipidLevel in class LipidFullStructure

getLipidString

public String getLipidString()

Description copied from class: LipidSpecies

Returns the normalized lipid string on the native level.

Overrides:

getLipidString in class LipidFullStructure

Returns:

the normalized lipid string.

getLipidString

public String getLipidString(LipidLevel level)

Description copied from class: LipidSpecies

Returns the normalized lipid string on the provided level.

Overrides:

getLipidString in class LipidFullStructure

Parameters:

level - the lipid level at which the lipid string should be generated.

Returns:

the normalized lipid string.