Package org.lifstools.jgoslin.domain

Class LipidFullStructure

java.lang.Object

org.lifstools.jgoslin.domain.LipidSpecies

org.lifstools.jgoslin.domain.LipidMolecularSpecies

org.lifstools.jgoslin.domain.LipidSnPosition

org.lifstools.jgoslin.domain.LipidStructureDefined

org.lifstools.jgoslin.domain.LipidFullStructure

Direct Known Subclasses:

LipidCompleteStructure

public class LipidFullStructure
extends LipidStructureDefined

Full structure level according to the 2020 update of the Liebisch shorthand nomenclature.

Author:

Dominik Kopczynski, Nils Hoffmann

See Also:

• LipidLevel

Field Summary

Fields inherited from class org.lifstools.jgoslin.domain.LipidSpecies

fa, faList, headGroup, info

Constructor Summary

Constructors

Constructor	Description
LipidFullStructure(Headgroup _headgroup, Collection<FattyAcid> _fa, KnownFunctionalGroups knownFunctionalGroups)
LipidFullStructure(Headgroup _headgroup, KnownFunctionalGroups knownFunctionalGroups)

Method Summary

Modifier and Type	Method	Description
LipidLevel	getLipidLevel()
String	getLipidString()	Returns the normalized lipid string on the native level.
String	getLipidString(LipidLevel level)	Returns the normalized lipid string on the provided level.

Methods inherited from class org.lifstools.jgoslin.domain.LipidMolecularSpecies

buildLipidSubspeciesName, buildLipidSubspeciesName, getElements

Methods inherited from class org.lifstools.jgoslin.domain.LipidSpecies

getExtendedClass, getFaList, getHeadGroup, getInfo

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LipidFullStructure

public LipidFullStructure(Headgroup _headgroup,
 KnownFunctionalGroups knownFunctionalGroups)

LipidFullStructure

public LipidFullStructure(Headgroup _headgroup,
 Collection<FattyAcid> _fa,
 KnownFunctionalGroups knownFunctionalGroups)

Method Details

getLipidLevel

public LipidLevel getLipidLevel()

Overrides:

getLipidLevel in class LipidStructureDefined

getLipidString

public String getLipidString()

Description copied from class: LipidSpecies

Returns the normalized lipid string on the native level.

Overrides:

getLipidString in class LipidStructureDefined

Returns:

the normalized lipid string.

getLipidString

public String getLipidString(LipidLevel level)

Description copied from class: LipidSpecies

Returns the normalized lipid string on the provided level.

Overrides:

getLipidString in class LipidStructureDefined

Parameters:

level - the lipid level at which the lipid string should be generated.

Returns:

the normalized lipid string.