Uses of Package
uk.ac.ebi.pride.jmztab2.model

Packages that use uk.ac.ebi.pride.jmztab2.model

Package	Description
de.isas.mztab2.io	This package contains implementations for reading and writing of mzTab-M files.
de.isas.mztab2.io.serialization	This package contains classes that implement custom Jackson serializers for the mzTab-M model objects.
uk.ac.ebi.pride.jmztab2.model	This package contains model classes for mzTab-M structural features like mandatory and optional columns.
uk.ac.ebi.pride.jmztab2.utils.parser	This package contains text file line parser implementations for the mzTab-M document sections.

Classes in uk.ac.ebi.pride.jmztab2.model used by de.isas.mztab2.io

Class	Description
MZTabColumnFactory	This is a static factory class which used to generate a couple of MZTabColumn objects, and organizes them into "logicalPosition, MZTabColumn" pairs.

Classes in uk.ac.ebi.pride.jmztab2.model used by de.isas.mztab2.io.serialization

Class	Description
IMZTabColumn	IMZTabColumn interface.
MetadataElement	Define all elements used in metadata.
MetadataProperty	Define a property in metadata, which depend on the MetadataElement.

Classes in uk.ac.ebi.pride.jmztab2.model used by uk.ac.ebi.pride.jmztab2.model

Class	Description
AbundanceColumn.Field
IMZTabColumn	IMZTabColumn interface.
IOptColumnMappingBuilder	Interface for optional column mapping builders.
ISmallMoleculeColumn	ISmallMoleculeColumn interface.
ISmallMoleculeEvidenceColumn	ISmallMoleculeEvidenceColumn interface.
ISmallMoleculeFeatureColumn	ISmallMoleculeFeatureColumn interface.
MetadataElement	Define all elements used in metadata.
MetadataProperty	Define a property in metadata, which depend on the MetadataElement.
MZBoolean	In mzTab, using 0-false, 1-true to express the boolean value.
MZTabColumn	Define a column header which used in Section.Protein_Header, Section.Peptide_Header, Section.PSM_Header, or Section.Small_Molecule_Header.
MZTabColumnFactory	This is a static factory class which used to generate a couple of MZTabColumn objects, and organizes them into "logicalPosition, MZTabColumn" pairs.
OptColumnMappingBuilder.GlobalOptColumnMappingBuilder	Create a new OptColumnMappingBuilder for global optional columns.
OptColumnMappingBuilder.IndexedElementOptColumnMappingBuilder	Create a new OptColumnMappingBuilder for IndexedElement.
OptionColumn	Additional columns can be added to the end of the protein table.
Section	Every line in an mzTab file MUST start with a three letter code identifying the type of line delimited by a Tab character.
SmallMoleculeColumn.Stable	Stable SmallMoleculeColumn definition templates.
SmallMoleculeEvidenceColumn.Stable	Stable SmallMoleculeEvidenceColumn definition templates.
SmallMoleculeFeatureColumn.Stable	Stable SmallMoleculeFeatureColumn definition templates.

Classes in uk.ac.ebi.pride.jmztab2.model used by uk.ac.ebi.pride.jmztab2.utils.parser

Class	Description
IMZTabColumn	IMZTabColumn interface.
MetadataElement	Define all elements used in metadata.
MZBoolean	In mzTab, using 0-false, 1-true to express the boolean value.
MZTabColumnFactory	This is a static factory class which used to generate a couple of MZTabColumn objects, and organizes them into "logicalPosition, MZTabColumn" pairs.
Section	Every line in an mzTab file MUST start with a three letter code identifying the type of line delimited by a Tab character.