Class COMLineParser
- java.lang.Object
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- uk.ac.ebi.pride.jmztab2.utils.parser.MZTabLineParser
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- uk.ac.ebi.pride.jmztab2.utils.parser.COMLineParser
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public class COMLineParser extends MZTabLineParser
Comment line parser. Comment lines can be placed anywhere in an mzTab file. These lines must start with the three-letter code COM and are ignored by most parsers. Empty lines can also occur anywhere in an mzTab file and are ignored.- Since:
- 10/02/13
- Author:
- qingwei
- See Also:
MZTabLineParser
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Field Summary
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Fields inherited from class uk.ac.ebi.pride.jmztab2.utils.parser.MZTabLineParser
context, errorList, items, line, lineNumber, section
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Constructor Summary
Constructors Constructor Description COMLineParser(MZTabParserContext context)Constructor for COMLineParser.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description de.isas.mztab2.model.CommentgetComment()getComment.voidparse(int lineNumber, String line, uk.ac.ebi.pride.jmztab2.utils.errors.MZTabErrorList errorList)We assume that user before call this method, have parse the raw line is not empty line and start with section prefix.
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Constructor Detail
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COMLineParser
public COMLineParser(MZTabParserContext context)
Constructor for COMLineParser.
- Parameters:
context- aMZTabParserContextobject.
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Method Detail
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parse
public void parse(int lineNumber, String line, uk.ac.ebi.pride.jmztab2.utils.errors.MZTabErrorList errorList) throws uk.ac.ebi.pride.jmztab2.utils.errors.MZTabException
We assume that user before call this method, have parse the raw line is not empty line and start with section prefix.- Overrides:
parsein classMZTabLineParser- Parameters:
lineNumber- a int.line- aStringobject.errorList- aMZTabErrorListobject.- Throws:
uk.ac.ebi.pride.jmztab2.utils.errors.MZTabException- if any.
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getComment
public de.isas.mztab2.model.Comment getComment()
getComment.
- Returns:
- a
Commentobject.
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