MZTabLineParser (jmztabm-io 1.0.4 API)

java.lang.Object
- uk.ac.ebi.pride.jmztab2.utils.parser.MZTabLineParser

Direct Known Subclasses:

COMLineParser, MTDLineParser, MZTabDataLineParser, MZTabHeaderLineParser
```
public class MZTabLineParser
extends Object
```
Common tab split line parser. If there exists format or logical errors during the parse process, system will add them into MZTabErrorList, or break validate and throw MZTabException directly.

Since:

10/02/13

Author:

qingwei

See Also:

MZTabHeaderLineParser, MZTabDataLineParser, MTDLineParser

Field Summary

Fields
Modifier and Type	Field	Description
`protected MZTabParserContext`	`context`
`protected uk.ac.ebi.pride.jmztab2.utils.errors.MZTabErrorList`	`errorList`
`protected String[]`	`items`	based on TAB char to split raw line into String array.
`protected String`	`line`
`protected int`	`lineNumber`
`protected Section`	`section`

Constructor Summary

Constructors
Modifier Constructor Description

protected MZTabLineParser(MZTabParserContext context)
Constructor for MZTabLineParser.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`parse(int lineNumber, String line, uk.ac.ebi.pride.jmztab2.utils.errors.MZTabErrorList errorList)`	We assume that user before call this method, have parse the raw line is not empty line and start with section prefix.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

lineNumber
```
protected int lineNumber
```

section
```
protected Section section
```

line
```
protected String line
```

items
```
protected String[] items
```
based on TAB char to split raw line into String array.

context

protected final MZTabParserContext context

errorList

protected uk.ac.ebi.pride.jmztab2.utils.errors.MZTabErrorList errorList

Constructor Detail
- MZTabLineParser
```
protected MZTabLineParser(MZTabParserContext context)
```
  Constructor for MZTabLineParser.
  
  Parameters:
  
  context - a MZTabParserContext object.

Method Detail
- parse
```
protected void parse(int lineNumber,
                     String line,
                     uk.ac.ebi.pride.jmztab2.utils.errors.MZTabErrorList errorList)
              throws uk.ac.ebi.pride.jmztab2.utils.errors.MZTabException
```
  We assume that user before call this method, have parse the raw line is not empty line and start with section prefix.
  
  Parameters:
  
  lineNumber - a int.
  
  line - a String object.
  
  errorList - a MZTabErrorList object.
  
  Throws:
  
  uk.ac.ebi.pride.jmztab2.utils.errors.MZTabException - if any.