Package de.isas.mztab2.io.validators

Class SpectraRefValidator

java.lang.Object

de.isas.mztab2.io.validators.SpectraRefValidator

All Implemented Interfaces:

FieldValidator<List<SpectraRef>>

public class SpectraRefValidator
extends Object
implements FieldValidator<List<SpectraRef>>

Author:

nilshoffmann

Constructor Summary

Constructors

Constructor	Description
SpectraRefValidator()

Method Summary

Modifier and Type	Method	Description
List<MZTabError>	validateLine(int lineNumber, MZTabParserContext parserContext, IMZTabColumn column, String field, List<SpectraRef> refList)	Validate the given object of type T, using the provided parser context and column to check the state of not yet completely parsed and constructed mzTab hierarchy.
protected Optional<MZTabError>	validatePattern(Pattern pattern, String reference, int lineNumber, IMZTabColumn column, String field, MsRun run)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SpectraRefValidator

public SpectraRefValidator()

Method Detail

validateLine

public List<MZTabError> validateLine(int lineNumber,
                                     MZTabParserContext parserContext,
                                     IMZTabColumn column,
                                     String field,
                                     List<SpectraRef> refList)

Description copied from interface: FieldValidator

Validate the given object of type T, using the provided parser context and column to check the state of not yet completely parsed and constructed mzTab hierarchy.

Specified by:

validateLine in interface FieldValidator<List<SpectraRef>>

Parameters:

lineNumber - the current line number being parsed. Maybe -1 to indicate no active lineNumber, e.g. for post-hoc refine validation.

parserContext - the parser context

column - the IMzTabColumn to use for type validation constraints

field - the string representation of the field

refList - the object to validate

Returns:

a list of MZTabError, maybe empty.

validatePattern

protected Optional<MZTabError> validatePattern(Pattern pattern,
                                               String reference,
                                               int lineNumber,
                                               IMZTabColumn column,
                                               String field,
                                               MsRun run)