Package de.isas.mztab2.io.validators

This package contains implementations for validation of mzTab-M parts during parsing.

Interface Summary

Interface	Description
FieldValidator<T>	Implementations of the field validator are applied to the type object (usually a parsed string element) during the parsing process.
RefiningValidator<T>	Implementations of the refining validator are applied to the type object after the actual line parsing process, for post-hoc validation.

Class Summary

Class	Description
AssayValidator	Validates that the quantification method section is present in metadata.
CvValidator	Validates that the controlled vocabulary section is present in metadata and that it is correctly populated.
DatabaseValidator	Validates that the database section is present and correctly populated in metadata.
MsRunValidator	Validates that the ms run section is present in metadata.
MzTabIdValidator	Validates that mzTab-ID is neither null nor empty.
MzTabVersionValidator	Validates that mzTab-version is neither null nor empty.
QuantificationMethodValidator	Validates that the quantification method section is present in metadata.
SmallMoleculeFeatureQuantificationUnitValidator	Validates that smallMoleculeFeatureQuantificationUnit is neither null nor empty.
SmallMoleculeIdConfidenceMeasureValidator	Validates that smallMolecule identification confidence measure is neither null nor empty.
SmallMoleculeQuantificationUnitValidator	Validates that smallMoleculeQuantificationUnit is neither null nor empty.
SoftwareValidator	Validates that the software section is present in metadata and contains at least one item.
SpectraRefValidator
StudyVariableValidator	Validates that the study variable section is present in metadata and is linked to all assays and ms runs.