Uses of Class
de.isas.mztab2.model.OptColumnMapping

Packages that use OptColumnMapping

Package	Description
de.isas.mztab2.io.serialization	This package contains classes that implement custom Jackson serializers for the mzTab-M model objects.
de.isas.mztab2.model	Base package for the jmztab-m data model, generated from the mzTab_m_swagger.yml specification.
uk.ac.ebi.pride.jmztab2.model	This package contains model classes for mzTab-M structural features like mandatory and optional columns.

Uses of OptColumnMapping in de.isas.mztab2.io.serialization

Methods in de.isas.mztab2.io.serialization with parameters of type OptColumnMapping

Modifier and Type	Method	Description
static String	Serializers.printOptColumnMapping(OptColumnMapping ocm)	printOptColumnMapping.

Method parameters in de.isas.mztab2.io.serialization with type arguments of type OptColumnMapping

Modifier and Type	Method	Description
static void	Serializers.writeOptColumnMappings(List<OptColumnMapping> optColumnMappings, com.fasterxml.jackson.core.JsonGenerator jg, com.fasterxml.jackson.databind.SerializerProvider sp)	writeOptColumnMappings.

Uses of OptColumnMapping in de.isas.mztab2.model

Methods in de.isas.mztab2.model that return OptColumnMapping

Modifier and Type	Method	Description
OptColumnMapping	OptColumnMapping.identifier(String identifier)	Builder method for identifier.
OptColumnMapping	OptColumnMapping.param(Parameter param)	Builder method for param.
OptColumnMapping	OptColumnMapping.value(String value)	Builder method for value.

Methods in de.isas.mztab2.model that return types with arguments of type OptColumnMapping

Modifier and Type	Method	Description
@Valid List<OptColumnMapping>	SmallMoleculeEvidence.getOpt()	Additional columns can be added to the end of the small molecule evidence table.
@Valid List<OptColumnMapping>	SmallMoleculeFeature.getOpt()	Additional columns can be added to the end of the small molecule feature table.
@Valid List<OptColumnMapping>	SmallMoleculeSummary.getOpt()	Additional columns can be added to the end of the small molecule table.

Methods in de.isas.mztab2.model with parameters of type OptColumnMapping

Modifier and Type	Method	Description
SmallMoleculeEvidence	SmallMoleculeEvidence.addOptItem(OptColumnMapping optItem)	Add a single optItem to the opt collection.
SmallMoleculeFeature	SmallMoleculeFeature.addOptItem(OptColumnMapping optItem)	Add a single optItem to the opt collection.
SmallMoleculeSummary	SmallMoleculeSummary.addOptItem(OptColumnMapping optItem)	Add a single optItem to the opt collection.
Optional<Assay>	MzTabAccess.getAssayFor(OptColumnMapping columnMapping, Metadata metadata)	Tries to locate the assay referenced by id from the columnMapping identifier.

Method parameters in de.isas.mztab2.model with type arguments of type OptColumnMapping

Modifier and Type	Method	Description
SmallMoleculeEvidence	SmallMoleculeEvidence.opt(List<OptColumnMapping> opt)	Builder method for opt.
SmallMoleculeFeature	SmallMoleculeFeature.opt(List<OptColumnMapping> opt)	Builder method for opt.
SmallMoleculeSummary	SmallMoleculeSummary.opt(List<OptColumnMapping> opt)	Builder method for opt.
void	SmallMoleculeEvidence.setOpt(List<OptColumnMapping> opt)	Set opt.
void	SmallMoleculeFeature.setOpt(List<OptColumnMapping> opt)	Set opt.
void	SmallMoleculeSummary.setOpt(List<OptColumnMapping> opt)	Set opt.

Uses of OptColumnMapping in uk.ac.ebi.pride.jmztab2.model

Methods in uk.ac.ebi.pride.jmztab2.model that return OptColumnMapping

Modifier and Type	Method	Description
default OptColumnMapping	IOptColumnMappingBuilder.build(String value)	Use the current builder state to create an OptColumnMapping with the provided value for e.g. a particular feature (row).
OptColumnMapping	OptColumnMappingBuilder.GlobalOptColumnMappingBuilder.build(String value)
OptColumnMapping	OptColumnMappingBuilder.IndexedElementOptColumnMappingBuilder.build(String value)