Uses of Class
de.isas.mztab2.model.Sample

Packages that use Sample

Package	Description
de.isas.mztab2.io.serialization	This package contains classes that implement custom Jackson serializers for the mzTab-M model objects.
de.isas.mztab2.model	Base package for the jmztab-m data model, generated from the mzTab_m_swagger.yml specification.
uk.ac.ebi.pride.jmztab2.utils.parser	This package contains text file line parser implementations for the mzTab-M document sections.

Uses of Sample in de.isas.mztab2.io.serialization

Methods in de.isas.mztab2.io.serialization with parameters of type Sample

Modifier and Type	Method	Description
void	SampleSerializer.serialize(Sample sample, com.fasterxml.jackson.core.JsonGenerator jg, com.fasterxml.jackson.databind.SerializerProvider sp)
void	SampleSerializer.serializeWithType(Sample value, com.fasterxml.jackson.core.JsonGenerator gen, com.fasterxml.jackson.databind.SerializerProvider serializers, com.fasterxml.jackson.databind.jsontype.TypeSerializer typeSer)

Constructor parameters in de.isas.mztab2.io.serialization with type arguments of type Sample

Constructor	Description
SampleSerializer(Class<Sample> t)	Constructor for SampleSerializer.

Uses of Sample in de.isas.mztab2.model

Methods in de.isas.mztab2.model that return Sample

Modifier and Type	Method	Description
Sample	Sample.addCellTypeItem(Parameter cellTypeItem)	Add a single cellTypeItem to the cellType collection.
Sample	Sample.addCustomItem(Parameter customItem)	Add a single customItem to the custom collection.
Sample	Sample.addDiseaseItem(Parameter diseaseItem)	Add a single diseaseItem to the disease collection.
Sample	Sample.addSpeciesItem(Parameter speciesItem)	Add a single speciesItem to the species collection.
Sample	Sample.addTissueItem(Parameter tissueItem)	Add a single tissueItem to the tissue collection.
Sample	Sample.cellType(List<Parameter> cellType)	Builder method for cellType.
Sample	Sample.custom(List<Parameter> custom)	Builder method for custom.
Sample	Sample.description(String description)	Builder method for description.
Sample	Sample.disease(List<Parameter> disease)	Builder method for disease.
@Valid Sample	Assay.getSampleRef()	The sample referenced by this assay.
Sample	Sample.id(Integer id)	Builder method for id.
Sample	Sample.name(String name)	Builder method for name.
Sample	Sample.species(List<Parameter> species)	Builder method for species.
Sample	Sample.tissue(List<Parameter> tissue)	Builder method for tissue.

Methods in de.isas.mztab2.model that return types with arguments of type Sample

Modifier and Type	Method	Description
@Valid List<Sample>	Metadata.getSample()	Specification of sample.

Methods in de.isas.mztab2.model with parameters of type Sample

Modifier and Type	Method	Description
Metadata	Metadata.addSampleItem(Sample sampleItem)	Add a single sampleItem to the sample collection.
Assay	Assay.sampleRef(Sample sampleRef)	Builder method for sampleRef.
void	Assay.setSampleRef(Sample sampleRef)	Set sampleRef.

Method parameters in de.isas.mztab2.model with type arguments of type Sample

Modifier and Type	Method	Description
Metadata	Metadata.sample(List<Sample> sample)	Builder method for sample.
void	Metadata.setSample(List<Sample> sample)	Set sample.

Uses of Sample in uk.ac.ebi.pride.jmztab2.utils.parser

Methods in uk.ac.ebi.pride.jmztab2.utils.parser that return Sample

Modifier and Type	Method	Description
Sample	MZTabParserContext.addSample(Metadata metadata, Sample sample)	Add a sample to metadata.
Sample	MZTabParserContext.addSampleCellType(Metadata metadata, Integer id, Parameter cellType)	Add a sample[id]-cell_type into sample.
Sample	MZTabParserContext.addSampleCustom(Metadata metadata, Integer id, Parameter custom)	Add a sample[id]-custom into sample.
Sample	MZTabParserContext.addSampleDescription(Metadata metadata, Integer id, String description)	Add a sample[id]-description into sample.
Sample	MZTabParserContext.addSampleDisease(Metadata metadata, Integer id, Parameter disease)	Add a sample[id]-disease into sample.
Sample	MZTabParserContext.addSampleSpecies(Metadata metadata, Integer id, Parameter species)	Add a sample[id]-species into sample.
Sample	MZTabParserContext.addSampleTissue(Metadata metadata, Integer id, Parameter tissue)	Add a sample[id]-tissue into sample.

Methods in uk.ac.ebi.pride.jmztab2.utils.parser with parameters of type Sample

Modifier and Type	Method	Description
Assay	MZTabParserContext.addAssaySample(Metadata metadata, Integer id, Sample sample)	Add assay[id]-sample_ref into metadata.
Sample	MZTabParserContext.addSample(Metadata metadata, Sample sample)	Add a sample to metadata.