Uses of Class
de.isas.mztab2.model.SmallMoleculeEvidence

Packages that use SmallMoleculeEvidence

Package	Description
de.isas.mztab2.io.serialization	This package contains classes that implement custom Jackson serializers for the mzTab-M model objects.
de.isas.mztab2.model	Base package for the jmztab-m data model, generated from the mzTab_m_swagger.yml specification.
uk.ac.ebi.pride.jmztab2.utils.parser	This package contains text file line parser implementations for the mzTab-M document sections.

Uses of SmallMoleculeEvidence in de.isas.mztab2.io.serialization

Methods in de.isas.mztab2.io.serialization with parameters of type SmallMoleculeEvidence

Modifier and Type	Method	Description
void	SmallMoleculeEvidenceSerializer.serialize(SmallMoleculeEvidence smallMoleculeEvidence, com.fasterxml.jackson.core.JsonGenerator jg, com.fasterxml.jackson.databind.SerializerProvider sp)
void	SmallMoleculeEvidenceSerializer.serializeWithType(SmallMoleculeEvidence value, com.fasterxml.jackson.core.JsonGenerator gen, com.fasterxml.jackson.databind.SerializerProvider serializers, com.fasterxml.jackson.databind.jsontype.TypeSerializer typeSer)

Constructor parameters in de.isas.mztab2.io.serialization with type arguments of type SmallMoleculeEvidence

Constructor	Description
SmallMoleculeEvidenceSerializer(Class<SmallMoleculeEvidence> t)	Constructor for SmallMoleculeEvidenceSerializer.

Uses of SmallMoleculeEvidence in de.isas.mztab2.model

Methods in de.isas.mztab2.model that return SmallMoleculeEvidence

Modifier and Type	Method	Description
SmallMoleculeEvidence	SmallMoleculeEvidence.addCommentItem(Comment commentItem)	Add a single commentItem to the comment collection.
SmallMoleculeEvidence	SmallMoleculeEvidence.addIdConfidenceMeasureItem(Double idConfidenceMeasureItem)	Add a single idConfidenceMeasureItem to the idConfidenceMeasure collection.
SmallMoleculeEvidence	SmallMoleculeEvidence.addOptItem(OptColumnMapping optItem)	Add a single optItem to the opt collection.
SmallMoleculeEvidence	SmallMoleculeEvidence.addSpectraRefItem(SpectraRef spectraRefItem)	Add a single spectraRefItem to the spectraRef collection.
SmallMoleculeEvidence	SmallMoleculeEvidence.adductIon(String adductIon)	Builder method for adductIon.
SmallMoleculeEvidence	SmallMoleculeEvidence.charge(Integer charge)	Builder method for charge.
SmallMoleculeEvidence	SmallMoleculeEvidence.chemicalFormula(String chemicalFormula)	Builder method for chemicalFormula.
SmallMoleculeEvidence	SmallMoleculeEvidence.chemicalName(String chemicalName)	Builder method for chemicalName.
SmallMoleculeEvidence	SmallMoleculeEvidence.comment(List<Comment> comment)	Builder method for comment.
SmallMoleculeEvidence	SmallMoleculeEvidence.databaseIdentifier(String databaseIdentifier)	Builder method for databaseIdentifier.
SmallMoleculeEvidence	SmallMoleculeEvidence.derivatizedForm(Parameter derivatizedForm)	Builder method for derivatizedForm.
SmallMoleculeEvidence	SmallMoleculeEvidence.evidenceInputId(String evidenceInputId)	Builder method for evidenceInputId.
SmallMoleculeEvidence	SmallMoleculeEvidence.expMassToCharge(Double expMassToCharge)	Builder method for expMassToCharge.
SmallMoleculeEvidence	SmallMoleculeEvidence.idConfidenceMeasure(List<Double> idConfidenceMeasure)	Builder method for idConfidenceMeasure.
SmallMoleculeEvidence	SmallMoleculeEvidence.identificationMethod(Parameter identificationMethod)	Builder method for identificationMethod.
SmallMoleculeEvidence	SmallMoleculeEvidence.inchi(String inchi)	Builder method for inchi.
SmallMoleculeEvidence	SmallMoleculeEvidence.msLevel(Parameter msLevel)	Builder method for msLevel.
SmallMoleculeEvidence	SmallMoleculeEvidence.opt(List<OptColumnMapping> opt)	Builder method for opt.
SmallMoleculeEvidence	SmallMoleculeEvidence.rank(Integer rank)	Builder method for rank.
SmallMoleculeEvidence	SmallMoleculeEvidence.smeId(Integer smeId)	Builder method for smeId.
SmallMoleculeEvidence	SmallMoleculeEvidence.smiles(String smiles)	Builder method for smiles.
SmallMoleculeEvidence	SmallMoleculeEvidence.spectraRef(List<SpectraRef> spectraRef)	Builder method for spectraRef.
SmallMoleculeEvidence	SmallMoleculeEvidence.theoreticalMassToCharge(Double theoreticalMassToCharge)	Builder method for theoreticalMassToCharge.
SmallMoleculeEvidence	SmallMoleculeEvidence.uri(String uri)	Builder method for uri.

Methods in de.isas.mztab2.model that return types with arguments of type SmallMoleculeEvidence

Modifier and Type	Method	Description
List<SmallMoleculeEvidence>	MzTabAccess.getEvidences(SmallMoleculeFeature smf)	Retrieve all small molecule evidences in order of definition for the provided small molecule feature.
List<SmallMoleculeEvidence>	MzTabAccess.getEvidencesByEvidenceInputId(String evidenceInputId)	Retrieve all small molecule evidences for the provided evidence input id.
@NotNull @Valid List<SmallMoleculeEvidence>	MzTab.getSmallMoleculeEvidence()	The small molecule evidence section is table-based, representing evidence for identifications of small molecules/features, from database search or any other process used to give putative identifications to molecules.

Methods in de.isas.mztab2.model with parameters of type SmallMoleculeEvidence

Modifier and Type	Method	Description
MzTab	MzTab.addSmallMoleculeEvidenceItem(SmallMoleculeEvidence smallMoleculeEvidenceItem)	Add a single smallMoleculeEvidenceItem to the smallMoleculeEvidence collection.

Method parameters in de.isas.mztab2.model with type arguments of type SmallMoleculeEvidence

Modifier and Type	Method	Description
void	MzTab.setSmallMoleculeEvidence(List<SmallMoleculeEvidence> smallMoleculeEvidence)	Set smallMoleculeEvidence.
MzTab	MzTab.smallMoleculeEvidence(List<SmallMoleculeEvidence> smallMoleculeEvidence)	Builder method for smallMoleculeEvidence.

Uses of SmallMoleculeEvidence in uk.ac.ebi.pride.jmztab2.utils.parser

Methods in uk.ac.ebi.pride.jmztab2.utils.parser that return SmallMoleculeEvidence

Modifier and Type	Method	Description
SmallMoleculeEvidence	SMELineParser.getRecord()	Retrieve the data line to a type mzTab domain object.