Package uk.ac.ebi.pride.jmztab2.model

Enum MetadataProperty

java.lang.Object

java.lang.Enum<MetadataProperty>

uk.ac.ebi.pride.jmztab2.model.MetadataProperty

All Implemented Interfaces:

Serializable, Comparable<MetadataProperty>

public enum MetadataProperty
extends Enum<MetadataProperty>

Define a property in metadata, which depend on the MetadataElement.

Since:

23/05/13

Author:

qingwei, nilshoffmann

Enum Constant Summary

Enum Constants

Enum Constant	Description
ASSAY_CUSTOM
ASSAY_EXTERNAL_URI
ASSAY_MS_RUN_REF
ASSAY_SAMPLE_REF
CONTACT_AFFILIATION
CONTACT_EMAIL
CONTACT_NAME
CV_FULL_NAME
CV_LABEL
CV_URI
CV_VERSION
DATABASE_PREFIX
DATABASE_URI
DATABASE_VERSION
INSTRUMENT_ANALYZER
INSTRUMENT_DETECTOR
INSTRUMENT_NAME
INSTRUMENT_SOURCE
MS_RUN_FORMAT
MS_RUN_FRAGMENTATION_METHOD
MS_RUN_HASH
MS_RUN_HASH_METHOD
MS_RUN_ID_FORMAT
MS_RUN_INSTRUMENT_REF
MS_RUN_LOCATION
MS_RUN_SCAN_POLARITY
MZTAB_ID
MZTAB_VERSION
SAMPLE_CELL_TYPE
SAMPLE_CUSTOM
SAMPLE_DESCRIPTION
SAMPLE_DISEASE
SAMPLE_SPECIES
SAMPLE_TISSUE
SMALL_MOLECULE_FEATURE_QUANTIFICATION_UNIT
SMALL_MOLECULE_IDENTIFICATION_RELIABILITY
SMALL_MOLECULE_QUANTIFICATION_UNIT
SOFTWARE_SETTING
STUDY_VARIABLE_ASSAY_REFS
STUDY_VARIABLE_AVERAGE_FUNCTION
STUDY_VARIABLE_DESCRIPTION
STUDY_VARIABLE_FACTORS
STUDY_VARIABLE_VARIATION_FUNCTION

Method Summary

Modifier and Type	Method	Description
static Optional<MetadataProperty>	findProperty(MetadataElement element, String propertyName)	Find property by MetadataElement and property name with case-insensitive.
MetadataElement	getElement()	Getter for the field element.
String	getName()	Getter for the field name.
String	toString()
static MetadataProperty	valueOf(String name)	Returns the enum constant of this type with the specified name.
static MetadataProperty[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

MZTAB_VERSION

public static final MetadataProperty MZTAB_VERSION

MZTAB_ID

public static final MetadataProperty MZTAB_ID

INSTRUMENT_NAME

public static final MetadataProperty INSTRUMENT_NAME

INSTRUMENT_SOURCE

public static final MetadataProperty INSTRUMENT_SOURCE

INSTRUMENT_ANALYZER

public static final MetadataProperty INSTRUMENT_ANALYZER

INSTRUMENT_DETECTOR

public static final MetadataProperty INSTRUMENT_DETECTOR

SOFTWARE_SETTING

public static final MetadataProperty SOFTWARE_SETTING

CONTACT_NAME

public static final MetadataProperty CONTACT_NAME

CONTACT_AFFILIATION

public static final MetadataProperty CONTACT_AFFILIATION

CONTACT_EMAIL

public static final MetadataProperty CONTACT_EMAIL

SMALL_MOLECULE_QUANTIFICATION_UNIT

public static final MetadataProperty SMALL_MOLECULE_QUANTIFICATION_UNIT

SMALL_MOLECULE_IDENTIFICATION_RELIABILITY

public static final MetadataProperty SMALL_MOLECULE_IDENTIFICATION_RELIABILITY

SMALL_MOLECULE_FEATURE_QUANTIFICATION_UNIT

public static final MetadataProperty SMALL_MOLECULE_FEATURE_QUANTIFICATION_UNIT

MS_RUN_FORMAT

public static final MetadataProperty MS_RUN_FORMAT

MS_RUN_LOCATION

public static final MetadataProperty MS_RUN_LOCATION

MS_RUN_INSTRUMENT_REF

public static final MetadataProperty MS_RUN_INSTRUMENT_REF

MS_RUN_ID_FORMAT

public static final MetadataProperty MS_RUN_ID_FORMAT

MS_RUN_FRAGMENTATION_METHOD

public static final MetadataProperty MS_RUN_FRAGMENTATION_METHOD

MS_RUN_HASH

public static final MetadataProperty MS_RUN_HASH

MS_RUN_HASH_METHOD

public static final MetadataProperty MS_RUN_HASH_METHOD

MS_RUN_SCAN_POLARITY

public static final MetadataProperty MS_RUN_SCAN_POLARITY

SAMPLE_SPECIES

public static final MetadataProperty SAMPLE_SPECIES

SAMPLE_TISSUE

public static final MetadataProperty SAMPLE_TISSUE

SAMPLE_CELL_TYPE

public static final MetadataProperty SAMPLE_CELL_TYPE

SAMPLE_DISEASE

public static final MetadataProperty SAMPLE_DISEASE

SAMPLE_DESCRIPTION

public static final MetadataProperty SAMPLE_DESCRIPTION

SAMPLE_CUSTOM

public static final MetadataProperty SAMPLE_CUSTOM

ASSAY_SAMPLE_REF

public static final MetadataProperty ASSAY_SAMPLE_REF

ASSAY_MS_RUN_REF

public static final MetadataProperty ASSAY_MS_RUN_REF

ASSAY_CUSTOM

public static final MetadataProperty ASSAY_CUSTOM

ASSAY_EXTERNAL_URI

public static final MetadataProperty ASSAY_EXTERNAL_URI

STUDY_VARIABLE_ASSAY_REFS

public static final MetadataProperty STUDY_VARIABLE_ASSAY_REFS

STUDY_VARIABLE_DESCRIPTION

public static final MetadataProperty STUDY_VARIABLE_DESCRIPTION

STUDY_VARIABLE_AVERAGE_FUNCTION

public static final MetadataProperty STUDY_VARIABLE_AVERAGE_FUNCTION

STUDY_VARIABLE_VARIATION_FUNCTION

public static final MetadataProperty STUDY_VARIABLE_VARIATION_FUNCTION

STUDY_VARIABLE_FACTORS

public static final MetadataProperty STUDY_VARIABLE_FACTORS

CV_LABEL

public static final MetadataProperty CV_LABEL

CV_FULL_NAME

public static final MetadataProperty CV_FULL_NAME

CV_VERSION

public static final MetadataProperty CV_VERSION

CV_URI

public static final MetadataProperty CV_URI

DATABASE_PREFIX

public static final MetadataProperty DATABASE_PREFIX

DATABASE_VERSION

public static final MetadataProperty DATABASE_VERSION

DATABASE_URI

public static final MetadataProperty DATABASE_URI

Method Detail

values

public static MetadataProperty[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (MetadataProperty c : MetadataProperty.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static MetadataProperty valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getElement

public MetadataElement getElement()

Getter for the field element.

Returns:

dependent MetadataElement

getName

public String getName()

Getter for the field name.

Returns:

property name

toString

public String toString()

Overrides:

toString in class Enum<MetadataProperty>

findProperty

public static Optional<MetadataProperty> findProperty(MetadataElement element,
                                                      String propertyName)

Find property by MetadataElement and property name with case-insensitive. If not find, return null.

Parameters:

element - a MetadataElement object.

propertyName - a String object.

Returns:

an optional MetadataProperty object.