All functions

ApiClient

ApiClient

ApiResponse

ApiResponse

Assay

Assay

CV

CV

ColumnParameterMapping

ColumnParameterMapping

Comment

Comment

Contact

Contact

Database

Database

Error

Error

Instrument

Instrument

Metadata

Metadata

MsRun

MsRun

MzTab

MzTab

OptColumnMapping

OptColumnMapping

Parameter

Parameter

Publication

Publication

PublicationItem

PublicationItem

Sample

Sample

SampleProcessing

SampleProcessing

SmallMoleculeEvidence

SmallMoleculeEvidence

SmallMoleculeFeature

SmallMoleculeFeature

SmallMoleculeSummary

SmallMoleculeSummary

Software

Software

SpectraRef

SpectraRef

StudyVariable

StudyVariable

Uri

Uri

ValidateApi

Validate operations

ValidatePlainApi

ValidatePlain operations

ValidationMessage

ValidationMessage

as.scalar()

Extends jsonlite's as.scalar method.

convertMzTab2MAF()

convertMzTab2MAF

extractComments()

Extract the Comment from data frame.

extractMetadata()

Extract metadata from data frame.

extractSmallMoleculeEvidence()

Extract the SmallMoleculeEvidence from data frame.

extractSmallMoleculeFeatures()

Extract the SmallMoleculeFeatures from data frame.

extractSmallMoleculeSummary()

Extract the SmallMoleculeSummary from data frame.

readMzTab()

Read mzTab-M file into data frame.

readMzTabString()

Read an mzTab-M string into a data frame.

safe_unbox()

Extends jsonlite's safe_unbox method.

validateMzTab()

Validate the provided mztab object against the online mzTab-M validator.

valueOrDefault()

Check if x is null. If so, return defaultValue, otherwise run function on x and return the result. If a value x is encountered that is NULL, and nullable is set to FALSE, execution will be stopped and an error message will be printed.

writeMzTab()

Write MzTab object as TSV to file.

writeMzTabJSON()

Write MzTab object as JSON to file.