Uses of Class
de.isas.mztab2.model.ValidationMessage

Packages that use ValidationMessage

Package	Description
de.isas.lipidomics.mztab2.validation	This package contains classes that provide the basic validator infrastructure used in the jmztabm-validation module.
de.isas.mztab2.io	This package contains implementations for reading and writing of mzTab-M files.
de.isas.mztab2.model	Base package for the jmztab-m data model, generated from the mzTab_m_swagger.yml specification.
de.isas.mztab2.validation	This package contains interfaces and implementations for the semantic validation via CvTerms.
de.isas.mztab2.validation.handlers	This package contains implementations for the semantic validation controlled vocabulary term rules.
uk.ac.ebi.pride.jmztab2.utils.errors	This package contains error type definitions and related classes used during mzTab validation.

Uses of ValidationMessage in de.isas.lipidomics.mztab2.validation

Methods in de.isas.lipidomics.mztab2.validation that return types with arguments of type ValidationMessage

Modifier and Type	Method	Description
List<ValidationMessage>	MzTabValidator.validate(MzTab mzTab)
static List<ValidationMessage>	MzTabValidator.validate(MzTab mzTab, ValidationMessage.MessageTypeEnum validationLevel, Validator<MzTab>... validators)	Validate the given mzTab object, filtering messages that are of a lower level than the given one.
default List<ValidationMessage>	Validator.validate(T t)	validate.

Uses of ValidationMessage in de.isas.mztab2.io

Methods in de.isas.mztab2.io that return types with arguments of type ValidationMessage

Modifier and Type	Method	Description
static List<ValidationMessage>	MzTabValidatingWriter.getValidationMessagesForLevel(Optional<List<ValidationMessage>> validationMessages, ValidationMessage.MessageTypeEnum level)	Returns all validation messages ONLY at the given level.
List<ValidationMessage>	MzTabValidatingWriter.WriteAndParseValidator.validate(MzTab mzTab)
Optional<List<ValidationMessage>>	MzTabValidatingWriter.write(OutputStreamWriter writer, MzTab mzTab)
Optional<List<ValidationMessage>>	MzTabValidatingWriter.write(Path path, MzTab mzTab)

Method parameters in de.isas.mztab2.io with type arguments of type ValidationMessage

Modifier and Type	Method	Description
static List<ValidationMessage>	MzTabValidatingWriter.getValidationMessagesForLevel(Optional<List<ValidationMessage>> validationMessages, ValidationMessage.MessageTypeEnum level)	Returns all validation messages ONLY at the given level.

Uses of ValidationMessage in de.isas.mztab2.model

Methods in de.isas.mztab2.model that return ValidationMessage

Modifier and Type	Method	Description
ValidationMessage	ValidationMessage.category(ValidationMessage.CategoryEnum category)	Builder method for category.
ValidationMessage	ValidationMessage.code(String code)	Builder method for code.
ValidationMessage	ValidationMessage.lineNumber(Long lineNumber)	Builder method for lineNumber.
ValidationMessage	ValidationMessage.message(String message)	Builder method for message.
ValidationMessage	ValidationMessage.messageType(ValidationMessage.MessageTypeEnum messageType)	Builder method for messageType.

Uses of ValidationMessage in de.isas.mztab2.validation

Methods in de.isas.mztab2.validation that return types with arguments of type ValidationMessage

Modifier and Type	Method	Description
List<ValidationMessage>	CvTermValidationHandler.handleParameters(RuleEvaluationResult result, boolean errorOnTermNotInRule)	Implementations of this method should take care that they always return a list, even if it is empty.
List<ValidationMessage>	CvDefinitionValidationHandler.validate(MzTab mzTab)
List<ValidationMessage>	CvMappingValidator.validate(MzTab mzTab)
List<ValidationMessage>	MzTabBeanValidator.validate(MzTab mzTab)	validate.

Uses of ValidationMessage in de.isas.mztab2.validation.handlers

Methods in de.isas.mztab2.validation.handlers that return types with arguments of type ValidationMessage

Modifier and Type	Method	Description
List<ValidationMessage>	AndValidationHandler.handleParameters(RuleEvaluationResult result, boolean errorOnTermNotInRule)
List<ValidationMessage>	ExtraParametersValidationHandler.handleParameters(RuleEvaluationResult result, boolean errorOnTermNotInRule)
List<ValidationMessage>	OrValidationHandler.handleParameters(RuleEvaluationResult result, boolean errorOnTermNotInRule)
List<ValidationMessage>	SharedParametersValidationHandler.handleParameters(RuleEvaluationResult result, boolean errorOnTermNotInRule)
List<ValidationMessage>	XorValidationHandler.handleParameters(RuleEvaluationResult result, boolean errorOnTermNotInRule)
List<ValidationMessage>	EmptyRuleHandler.handleRule(CvMappingRule rule, List<org.apache.commons.lang3.tuple.Pair<org.apache.commons.jxpath.Pointer,Parameter>> selection)

Uses of ValidationMessage in uk.ac.ebi.pride.jmztab2.utils.errors

Methods in uk.ac.ebi.pride.jmztab2.utils.errors that return ValidationMessage

Modifier and Type	Method	Description
ValidationMessage	MZTabError.toValidationMessage()

Methods in uk.ac.ebi.pride.jmztab2.utils.errors that return types with arguments of type ValidationMessage

Modifier and Type	Method	Description
List<ValidationMessage>	MZTabErrorList.convertToValidationMessages()	Converts this error list to a list of validation messages.
static List<ValidationMessage>	MZTabErrorList.convertToValidationMessages(MZTabErrorList errorList)	Converts the provided error list to a list of validation messages.