Uses of Class uk.ac.ebi.pride.jmztab2.utils.parser.MZTabParserContext (MzTab-M 2.0 reference implementation. 1.0.6 API)

Packages that use MZTabParserContext
Package	Description
de.isas.mztab2.io.validators	This package contains implementations for validation of mzTab-M parts during parsing.
uk.ac.ebi.pride.jmztab2.model	This package contains model classes for mzTab-M structural features like mandatory and optional columns.
uk.ac.ebi.pride.jmztab2.utils.parser	This package contains text file line parser implementations for the mzTab-M document sections.

Uses of MZTabParserContext in de.isas.mztab2.io.validators

Methods in de.isas.mztab2.io.validators with parameters of type MZTabParserContext
Modifier and Type	Method	Description
`default List<MZTabError>`	FieldValidator.`validateLine(int lineNumber, MZTabParserContext parserContext, IMZTabColumn column, String field, T t)`	Validate the given object of type T, using the provided parser context and column to check the state of not yet completely parsed and constructed mzTab hierarchy.
`List<MZTabError>`	SpectraRefValidator.`validateLine(int lineNumber, MZTabParserContext parserContext, IMZTabColumn column, String field, List<SpectraRef> refList)`
`List<MZTabError>`	AssayValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`List<MZTabError>`	CvValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`List<MZTabError>`	DatabaseValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`List<MZTabError>`	MsRunValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`List<MZTabError>`	MzTabIdValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`List<MZTabError>`	MzTabVersionValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`List<MZTabError>`	QuantificationMethodValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`default List<MZTabError>`	RefiningValidator.`validateRefine(T t, MZTabParserContext parserContext)`	Validate the given object of type T, using the provided parser context to check state of not yet completely parsed and constructed mzTab hierarchy.
`List<MZTabError>`	SmallMoleculeFeatureQuantificationUnitValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`List<MZTabError>`	SmallMoleculeIdConfidenceMeasureValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`List<MZTabError>`	SmallMoleculeQuantificationUnitValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`List<MZTabError>`	SoftwareValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`
`List<MZTabError>`	StudyVariableValidator.`validateRefine(Metadata metadata, MZTabParserContext parserContext)`

Uses of MZTabParserContext in uk.ac.ebi.pride.jmztab2.model

Methods in uk.ac.ebi.pride.jmztab2.model with parameters of type MZTabParserContext
Modifier and Type	Method	Description
`static List<SpectraRef>`	MZTabUtils.`parseSpectraRefList(MZTabParserContext context, Metadata metadata, String target)`	Parse a `SpectraRef` list.

Uses of MZTabParserContext in uk.ac.ebi.pride.jmztab2.utils.parser

Fields in uk.ac.ebi.pride.jmztab2.utils.parser declared as MZTabParserContext
Modifier and Type	Field	Description
`protected MZTabParserContext`	MZTabLineParser.`context`

Methods in uk.ac.ebi.pride.jmztab2.utils.parser with parameters of type MZTabParserContext
Modifier and Type	Method	Description
`protected List<SpectraRef>`	MZTabDataLineParser.`checkSpectraRef(MZTabParserContext context, IMZTabColumn column, String spectraRef, boolean allowNull)`	Check and translate spectraRef string into `SpectraRef` list.

Constructors in uk.ac.ebi.pride.jmztab2.utils.parser with parameters of type MZTabParserContext
Constructor	Description
`COMLineParser(MZTabParserContext context)`	Constructor for COMLineParser.
`MTDLineParser(MZTabParserContext context)`	Constructor for MTDLineParser.
`MZTabDataLineParser(MZTabParserContext context)`	Constructor for MZTabDataLineParser.
`MZTabDataLineParser(MZTabParserContext context, MZTabColumnFactory factory, PositionMapping positionMapping, Metadata metadata, MZTabErrorList errorList)`	Generate a mzTab data line parser.
`MZTabHeaderLineParser(MZTabParserContext context, MZTabColumnFactory factory, Metadata metadata)`	Parse a header line into `MZTabColumnFactory` structure.
`MZTabLineParser(MZTabParserContext context)`	Constructor for MZTabLineParser.
`SEHLineParser(MZTabParserContext context, Metadata metadata)`	Constructor for SEHLineParser.
`SFHLineParser(MZTabParserContext context, Metadata metadata)`	Constructor for SFHLineParser.
`SMELineParser(MZTabParserContext context, MZTabColumnFactory factory, PositionMapping positionMapping, Metadata metadata, MZTabErrorList errorList)`	Constructor for SMELineParser.
`SMFLineParser(MZTabParserContext context, MZTabColumnFactory factory, PositionMapping positionMapping, Metadata metadata, MZTabErrorList errorList)`	Constructor for SMFLineParser.
`SMHLineParser(MZTabParserContext context, Metadata metadata)`	Constructor for SMHLineParser.
`SMLLineParser(MZTabParserContext context, MZTabColumnFactory factory, PositionMapping positionMapping, Metadata metadata, MZTabErrorList errorList)`	Constructor for SMLLineParser.