Uses of Class
de.isas.mztab2.model.SpectraRef

Packages that use SpectraRef

Package	Description
de.isas.mztab2.io.validators	This package contains implementations for validation of mzTab-M parts during parsing.
de.isas.mztab2.model	Base package for the jmztab-m data model, generated from the mzTab_m_swagger.yml specification.
uk.ac.ebi.pride.jmztab2.model	This package contains model classes for mzTab-M structural features like mandatory and optional columns.
uk.ac.ebi.pride.jmztab2.utils.parser	This package contains text file line parser implementations for the mzTab-M document sections.

Uses of SpectraRef in de.isas.mztab2.io.validators

Method parameters in de.isas.mztab2.io.validators with type arguments of type SpectraRef

Modifier and Type	Method	Description
List<MZTabError>	SpectraRefValidator.validateLine(int lineNumber, MZTabParserContext parserContext, IMZTabColumn column, String field, List<SpectraRef> refList)

Uses of SpectraRef in de.isas.mztab2.model

Methods in de.isas.mztab2.model that return SpectraRef

Modifier and Type	Method	Description
SpectraRef	SpectraRef.msRun(MsRun msRun)	Builder method for msRun.
SpectraRef	SpectraRef.reference(String reference)	Builder method for reference.

Methods in de.isas.mztab2.model that return types with arguments of type SpectraRef

Modifier and Type	Method	Description
@NotNull @Valid List<SpectraRef>	SmallMoleculeEvidence.getSpectraRef()	Reference to a spectrum in a spectrum file, for example a fragmentation spectrum has been used to support the identification.

Methods in de.isas.mztab2.model with parameters of type SpectraRef

Modifier and Type	Method	Description
SmallMoleculeEvidence	SmallMoleculeEvidence.addSpectraRefItem(SpectraRef spectraRefItem)	Add a single spectraRefItem to the spectraRef collection.

Method parameters in de.isas.mztab2.model with type arguments of type SpectraRef

Modifier and Type	Method	Description
void	SmallMoleculeEvidence.setSpectraRef(List<SpectraRef> spectraRef)	Set spectraRef.
SmallMoleculeEvidence	SmallMoleculeEvidence.spectraRef(List<SpectraRef> spectraRef)	Builder method for spectraRef.

Uses of SpectraRef in uk.ac.ebi.pride.jmztab2.model

Methods in uk.ac.ebi.pride.jmztab2.model that return types with arguments of type SpectraRef

Modifier and Type	Method	Description
static List<SpectraRef>	MZTabUtils.parseSpectraRefList(MZTabParserContext context, Metadata metadata, String target)	Parse a SpectraRef list.

Uses of SpectraRef in uk.ac.ebi.pride.jmztab2.utils.parser

Methods in uk.ac.ebi.pride.jmztab2.utils.parser that return types with arguments of type SpectraRef

Modifier and Type	Method	Description
protected List<SpectraRef>	MZTabDataLineParser.checkSpectraRef(MZTabParserContext context, IMZTabColumn column, String spectraRef, boolean allowNull)	Check and translate spectraRef string into SpectraRef list.