de.isas.lipidomics.mztab2.validation |
This package contains classes that provide the basic validator infrastructure used in the jmztabm-validation module.
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de.isas.lipidomics.mztab2.validation.constraints |
This package contains custom validation annotations for the javax.validation framework.
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de.isas.lipidomics.mztab2.validation.validators |
This package contains custom validators that implement the
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de.isas.mztab2.cli |
This package contains the command line interface for jmzTab-M validation and conversion.
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de.isas.mztab2.cvmapping |
This package contains classes for controlled vocabulary term access, comparison, results and external cv parameter resolution.
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de.isas.mztab2.io |
This package contains implementations for reading and writing of mzTab-M files.
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de.isas.mztab2.io.formats |
This package defines formats for Jackson that define, which serializer should be used for a particular object type.
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de.isas.mztab2.io.serialization |
This package contains classes that implement custom Jackson serializers for the mzTab-M model objects.
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de.isas.mztab2.io.validators |
This package contains implementations for validation of mzTab-M parts during parsing.
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de.isas.mztab2.model |
Base package for the jmztab-m data model, generated from the mzTab_m_swagger.yml specification.
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de.isas.mztab2.test.utils |
This package contains custom JUnit Rules for extraction of class path resource files and additional logging for testing.
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de.isas.mztab2.validation |
This package contains interfaces and implementations for the semantic validation via CvTerms.
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de.isas.mztab2.validation.handlers |
This package contains implementations for the semantic validation controlled vocabulary term rules.
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info.psidev.cvmapping |
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uk.ac.ebi.pride.jmztab2 |
This package contains jmzTab-M model and utility classes that were adapted from the original jmzTab implementation.
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uk.ac.ebi.pride.jmztab2.model |
This package contains model classes for mzTab-M structural features like mandatory and optional columns.
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uk.ac.ebi.pride.jmztab2.utils |
This package contains the property file mapping for mzTab-M's validation messages.
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uk.ac.ebi.pride.jmztab2.utils.errors |
This package contains error type definitions and related classes used during mzTab validation.
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uk.ac.ebi.pride.jmztab2.utils.parser |
This package contains text file line parser implementations for the mzTab-M document sections.
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